View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_high_17 (Length: 346)
Name: NF21585_high_17
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 3255739 - 3255420
Alignment:
| Q |
18 |
aactgtgaaacttcattgttggccctttaattaaattaatacaatgcattgagtctgaatggcaaacaagatgagcaaaattcttttccttggctaacaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3255739 |
aactgtgaaacttcattgttggccctttaattaaattaatacaatgcattgagtctgaatagcaaacaagatgagcaaaattcttttccttggctaacaa |
3255640 |
T |
|
| Q |
118 |
gaggccatgataaatagcaaaaagtttcgcgtaaagaatgtcggtaga-----ggatgtaacatgaaaattctgagaggtagtagactgcattatttcga |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
3255639 |
gaggccatgataaatagcaaaaagtttcgcgtaaagaatgtcggtagaattgtggatgtaacatgaaaattctgagaggtagtagcctgcattatttcaa |
3255540 |
T |
|
| Q |
213 |
agaagaccaccatagccaactctaggaggggagccaagacaactatcatcaacattaagaatcacacaagagcggttgtttcgttccacttggtgaatct |
312 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3255539 |
agaagaccaccgtagccaactctaggaggggagccaagacaactatcatcaacattaagaatcacacaagagcggttgtttcgttccacttggtgaatct |
3255440 |
T |
|
| Q |
313 |
ctcatcaatagcaccatttt |
332 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
3255439 |
ctcatcaatagcaccatttt |
3255420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 5042657 - 5042976
Alignment:
| Q |
18 |
aactgtgaaacttcattgttggccctttaattaaattaatacaatgcattgagtctgaatggcaaacaagatgagcaaaattcttttccttggctaacaa |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||| |
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|
| T |
5042657 |
aactgtgaaacttcattattggccctttaattaaatgaatacaatgcattgagtctgaatagcaaacaagatcagcaacattcttttccttggct-acaa |
5042755 |
T |
|
| Q |
118 |
gaggccatgataaatagcaaaaagtttcgcgtaaagaatgtcggtaga-----ggatgtaacatgaaaattctgagaggtagtagactgcattatttcga |
212 |
Q |
| |
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||| || ||||||||| |||||||||||||||||||||||||| ||| |||||| || | |||| |||||||||||| |||||||||||||| |
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| T |
5042756 |
gagtccctgataaataacaaaaagtttcgcgtaaagaatgtcgaaagaattatggatgtgaccttaaaaacaagagaggtagtagcctgcattatttcga |
5042855 |
T |
|
| Q |
213 |
agaagaccaccatagccaactctaggaggggagccaagacaactatcatcaacattaagaatcacacaagagcggttgtt-tcgttccacttggtgaatc |
311 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||||| |||||||| |||||||||||||||||| |||||| |||| || ||||||||||| |||||| |
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| T |
5042856 |
agaagaccaccgtagccagctctaggaggagagccaggacaactaccatcaacattaagaatcatgcaagagtggttattgtcgttccacttaatgaatc |
5042955 |
T |
|
| Q |
312 |
tctcatcaatagcaccatttt |
332 |
Q |
| |
|
||||| ||||||||||||||| |
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|
| T |
5042956 |
tctcaccaatagcaccatttt |
5042976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 18055909 - 18055593
Alignment:
| Q |
21 |
tgtgaaacttcattgttggccctttaattaaattaatacaatgcattgagtctgaatggcaaacaagatgagcaaaattcttttccttggctaacaagag |
120 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||| |
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|
| T |
18055909 |
tgtgaaacttcatagctggccctttaattaaattaatacaatgcattgagtctgaatagcaaacaagatcaacaacattcttttccttggctaacaagag |
18055810 |
T |
|
| Q |
121 |
gccatgataaatagcaaaaagtttcgcgtaaagaatgtcggtaga-----ggatgtaacatgaaaattctgagaggtagtagactgcattatttcgaaga |
215 |
Q |
| |
|
||| |||||||||||||| |||| | |||||| |||||||| ||| | ||||||| |||||| ||||||||||||| | |||| |||||||||| |
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|
| T |
18055809 |
gccgtgataaatagcaaagagttccacgtaaaaaatgtcggaagaattatgaatgtaacctgaaaaacctgagaggtagtaaccagcatgatttcgaaga |
18055710 |
T |
|
| Q |
216 |
agaccaccatagccaactctaggaggggagccaagacaactatcatcaacattaagaatcacacaagagcggttgtt-tcgttccacttggtgaatctct |
314 |
Q |
| |
|
|||||| | |||||| |||||| || || |||||||||||| |||||||||||||||||||||||||| |||| || | |||||||||| ||||||||| |
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|
| T |
18055709 |
agaccatcgtagccagctctagagggtgatccaagacaactaccatcaacattaagaatcacacaagagtggttattattgttccacttgatgaatctct |
18055610 |
T |
|
| Q |
315 |
catcaatagcaccattt |
331 |
Q |
| |
|
| |||||| |||||||| |
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|
| T |
18055609 |
cttcaataacaccattt |
18055593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 5214651 - 5214723
Alignment:
| Q |
47 |
attaaattaatacaatgcattgagtctgaatggcaaacaagatgagcaaaattcttttccttggctaacaaga |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||| | || |||||||||||||||| |||||| |
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|
| T |
5214651 |
attaaattaatacattgcattgagtctgaatagcaaacaagatcaataacattcttttccttggctgacaaga |
5214723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 5214228 - 5214265
Alignment:
| Q |
18 |
aactgtgaaacttcattgttggccctttaattaaatta |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5214228 |
aactgtgaaacttcattgttggccctttaattaaatta |
5214265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 12644102 - 12644345
Alignment:
| Q |
30 |
tcattgttggccctttaattaaattaatacaatgcattgagtctgaatggcaaacaagatgagcaaaattcttttccttggctaacaagaggccatgata |
129 |
Q |
| |
|
|||||| |||||| ||||| | ||| || ||||||| |||||||||| ||||||| || ||||| | ||||||||| ||||||| ||| || ||||| |
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|
| T |
12644102 |
tcattgatggccccttaatgagattgatgcaatgcaaagagtctgaataacaaacaaaatcagcaatagccttttccttagctaacatgagaccctgata |
12644201 |
T |
|
| Q |
130 |
aatagcaaaaagtttcgcgtaaagaatgtcggtaga-----ggatgtaacatgaaaattctgagaggtagtagactgcattatttcgaagaagaccacca |
224 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||| || || ||||| ||| ||||||| ||| || |||| | |||||| |||||||| ||| |||||| |
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|
| T |
12644202 |
aatagcaaaaagttccgcataaaggatgtctgttgaatcttggatgaaacctgaaaatcctgtcagatagttgcctgcataatttcgaaaaaggccacca |
12644301 |
T |
|
| Q |
225 |
tagccaactctaggaggggagccaagacaactatcatcaacatt |
268 |
Q |
| |
|
|||||| |||||| | |||| |||||||||| |||||||||| |
|
|
| T |
12644302 |
tagccagctctagtattggaggcaagacaacttccatcaacatt |
12644345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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