View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21585_high_28 (Length: 298)
Name: NF21585_high_28
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 5867481 - 5867726
Alignment:
| Q |
16 |
ctcttttcattcattttaacttaattcctgaattatattctcttgttgtgaattttgtagaaaattggaatcaatgaagttacatataccgttgatctca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5867481 |
ctcttttcattcattttaacttaattcctgaattatattctcttgttgtgaattttgtagaaaattggaatcaatgaagttacatataccgttgatctca |
5867580 |
T |
|
| Q |
116 |
agaaaggagaagtcaccaaaggttaatttcaattcaatttgattcaattttatcatgaatcatctaaagttgcattgttctgattacggttgtagttact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
5867581 |
agaaaggagaagtcaccaaaggttaatttcaattcaatttgattcaattttatcatgaattatctaaagttgcattgttctgattacggctgtagtttct |
5867680 |
T |
|
| Q |
216 |
ttaaggttgaaattgcaattttgattacaattatctatgattgcaa |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5867681 |
ttaaggttgaaattgcaattttgattacaattatctatgattgcaa |
5867726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University