View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21585_high_30 (Length: 298)
Name: NF21585_high_30
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_high_30 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 2951753 - 2951473
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2951753 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattc |
2951654 |
T |
|
| Q |
101 |
tatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2951653 |
tatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtga |
2951554 |
T |
|
| Q |
201 |
ccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2951553 |
ccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgcctgcgaataacataggggaccttg |
2951473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 2926971 - 2926692
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
2926971 |
ttataaaagcggaattgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgtttgaaatcagataagatagattc |
2926872 |
T |
|
| Q |
101 |
tatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtga |
200 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2926871 |
tatgtagccgactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggggttga |
2926772 |
T |
|
| Q |
201 |
ccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggacctt |
280 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2926771 |
ccgtggtgaaaggggccaatagaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggacctt |
2926692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 3004048 - 3004328
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
3004048 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgtttgaaatcagataagacagattc |
3004147 |
T |
|
| Q |
101 |
tatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtga |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3004148 |
tatgtagcagactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgattttccatgttttggagctgggggtga |
3004247 |
T |
|
| Q |
201 |
ccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttg |
281 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3004248 |
ccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttg |
3004328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 2934410 - 2934131
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattc |
100 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2934410 |
ttataaaagcggaatctattaaaattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacgtttgaaatcagataagatagattc |
2934311 |
T |
|
| Q |
101 |
tatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtga |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934310 |
tatgtagcagactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtga |
2934211 |
T |
|
| Q |
201 |
ccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggacctt |
280 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2934210 |
ccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctttgttgtgtctgcgaataacataagggacctt |
2934131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 2997664 - 2997944
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| || |
|
|
| T |
2997664 |
ttataaaaccggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgtttgaaattagataagatagaatc |
2997763 |
T |
|
| Q |
101 |
tatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtga |
200 |
Q |
| |
|
|| |||| |||||||| ||||||||||||| |||| |||||||||| | ||||||| ||||||||||||| |||||||||||||||||| || ||| |
|
|
| T |
2997764 |
tacgtagcatactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatga |
2997863 |
T |
|
| Q |
201 |
ccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||| || ||||||| | ||||||||||| |
|
|
| T |
2997864 |
ccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtctgcgttgagtttgcgaattttagaggggaccttg |
2997944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 2982683 - 2982397
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| || |
|
|
| T |
2982683 |
ttataaaagcggaatcgattaagattaacttaacaagttcattatgagaaaatggtaggggttcagaataacagtgtttgaaatcagataagatagaatc |
2982584 |
T |
|
| Q |
101 |
tatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgg------ |
194 |
Q |
| |
|
|| |||| || |||||||||||| |||||| ||||| ||| |||||| | ||||||| |||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
2982583 |
tacgtagcagaccaagtcgtttaaagatgcctcggttcgttgaagaaaagctttgaagtgaatgagcttctgacgttccatgttttggagatggaggcct |
2982484 |
T |
|
| Q |
195 |
gggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttg |
281 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||| | ||||||||||| ||||||||||| |
|
|
| T |
2982483 |
aggtgaccgtggtgaaaggggccaatggaaacgacattgggggtgtatgcgttttcgttgactgtgcgaataacagaggggaccttg |
2982397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 2659270 - 2659550
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| ||||||| |||||| |
|
|
| T |
2659270 |
ttataaaacaggaatcgattaagattaacttaacaagttcattatcagaaaatggtagggtttcggaataacaacttttgaaacgagataagttagattt |
2659369 |
T |
|
| Q |
101 |
tatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtga |
200 |
Q |
| |
|
||||| | || ||| || ||||||||| ||||||| |||||||||| | || |||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
2659370 |
tatgttgctgaccaaggtgtctaaacatgcattggttcgttggagaaaagctttcaagtaaatgagtttgtgacgttccatgttttggagctgggggtga |
2659469 |
T |
|
| Q |
201 |
ccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttg |
281 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | || |||| || |||||||| || ||||||||||| |
|
|
| T |
2659470 |
tcatggtgaaaggggccaatggaaacgagagtgggggtgtatgctttttcgttgagtgtgcgaatagcagaggggaccttg |
2659550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 2964299 - 2964013
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattc |
100 |
Q |
| |
|
|||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||| || |
|
|
| T |
2964299 |
ttataaaaccagaatcgattaagattaacttgacaagttcatcatgagaaaatggtagagtttcggaataacagcatttgaaatcagataagatagcatc |
2964200 |
T |
|
| Q |
101 |
tatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttgga------gctgg |
194 |
Q |
| |
|
||||||| || | ||||||||| || || ||||| |||||||||||| ||||||||||||||||| || | |||||||||||||| | ||| |
|
|
| T |
2964199 |
tatgtagtagaccatttcgtttaaagttgtctcggttcgttggagaaaatctttgaagtaaatgagtttttgtcgttccatgttttggatctgggggtgg |
2964100 |
T |
|
| Q |
195 |
gggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttg |
281 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| ||||||||||||||||| || |||| || |||||||| || ||||||||||| |
|
|
| T |
2964099 |
gggtgaccgtggtgaaaggggccgatggaaacgaacttgggggtgtatgcgttttcgttgagtgtgcgaatatcagaggggaccttg |
2964013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 2972676 - 2972570
Alignment:
| Q |
136 |
ttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgaccttggg |
235 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||| |||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
2972676 |
ttcttttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggtttgaacgtggtgaaaggggccaatggaaacgactttggg |
2972577 |
T |
|
| Q |
236 |
ggtgtat |
242 |
Q |
| |
|
|||||| |
|
|
| T |
2972576 |
agtgtat |
2972570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 2973824 - 2973727
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagat |
98 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||||||| ||||||||||| |||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
2973824 |
ttataaaaccggaatccattaaaattaacttaacaagttcaatatgagaaaatgatagggttttggaataacagcctttgaaatcagataagatagat |
2973727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 35491 - 35774
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcat---gagaaaatggtagggtttcagaataacaacttttgaaatcagataagataga |
97 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
35491 |
ttataaaaccggaatcgattaagattaacttaacaagttcttcatcctgaggaaatgatagggtttccgaataacaacatttgaaatcagataagataga |
35590 |
T |
|
| Q |
98 |
ttctatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggggg |
197 |
Q |
| |
|
| ||||| | | ||| | ||||| |||| ||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
35591 |
atatatgtcgctgatcaagatgcttaaagatgcattggttcgttggagaaaatctttgaagtaaatgagtttgtgacgttccatgtttttgagctggggg |
35690 |
T |
|
| Q |
198 |
tgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttg |
281 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
35691 |
tgaccgtggtgaaaggggccaatggaaacgaaattaggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttg |
35774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 3338992 - 3338719
Alignment:
| Q |
1 |
ttataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |||| ||| |||||||||| ||||||||||| ||||||||| || |
|
|
| T |
3338992 |
ttataaaaccggaatcgattaagattaacttaacaagtttatcatcagaaaatgttaggaattccgaataacaacgtttgaaatcaggtaagatagactc |
3338893 |
T |
|
| Q |
101 |
tatgtagacaactaagtcgtttaaacatgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtga |
200 |
Q |
| |
|
|| ||||| || ||||| ||||||||||||| ||||| |||||||||| | ||||||||||||||||| |||| ||||||||||| ||| ||| | | |
|
|
| T |
3338892 |
tacgtagaagaccaagtcttttaaacatgcctcggttcgttggagaaaagctttgaagtaaatgagtttgtgacgttccatgttttagagtcgggtttta |
3338793 |
T |
|
| Q |
201 |
ccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggg |
274 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
3338792 |
ccgtggtgaaaggggccaatggaaacgaacttaggggtgtatgcgtcttcattgtgtttgcgaataacagaggg |
3338719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 49618197 - 49618100
Alignment:
| Q |
10 |
cggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattctatgtag |
107 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||| |||||| | ||||||| ||||||||| || ||||||||| |
|
|
| T |
49618197 |
cggaatcaattaagattaacttaacaaattcatcatgagtaaattgtagggttttggaataagagtgattgaaatgagataagatggaatctatgtag |
49618100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 266
Target Start/End: Complemental strand, 49613093 - 49612955
Alignment:
| Q |
134 |
ggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtg------accatggtgaaaggggccaatggaaacg |
227 |
Q |
| |
|
||||| |||||||||| | ||||||||||||||||| || | |||||||||||||| ||| |||| || ||||| || ||||||||||||| | |
|
|
| T |
49613093 |
ggttcgttggagaaaagctttgaagtaaatgagtttgtggcgctccatgttttggaggtggtggtggcggtgactgtggtggaaagggccaatggaaatg |
49612994 |
T |
|
| Q |
228 |
accttgggggtgtatgcgtctttgttgtgtctgcgaata |
266 |
Q |
| |
|
|| |||||||||||||||||| |||| | ||||||||| |
|
|
| T |
49612993 |
actttgggggtgtatgcgtctgggttgagactgcgaata |
49612955 |
T |
|
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