View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_high_45 (Length: 236)
Name: NF21585_high_45
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_high_45 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 45390144 - 45390193
Alignment:
| Q |
187 |
atcactgcatgcttcccaattctcttgtacacatattcaaccaacattgc |
236 |
Q |
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| T |
45390144 |
atcactgcatgcttcccaattctcttgtacacatattcaaccaacattgc |
45390193 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 45385828 - 45385898
Alignment:
| Q |
22 |
gggtatgcatacatattgattggtggattaaagtagtgttcannnnnnnncatctcctcctccaacttagt |
92 |
Q |
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| T |
45385828 |
gggtatgcatacatattgattggtggattaaagtagtgttcattttttttcatctcctcctccaacttagt |
45385898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 45385990 - 45386042
Alignment:
| Q |
184 |
acaatcactgcatgcttcccaattctcttgtacacatattcaaccaacattgc |
236 |
Q |
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| T |
45385990 |
acaatcactgcatgcttcccaattctcttgtacatgtattcaaccaacattgc |
45386042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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