View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21585_high_46 (Length: 234)

Name: NF21585_high_46
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21585_high_46
NF21585_high_46
[»] chr6 (2 HSPs)
chr6 (21-234)||(4036711-4036925)
chr6 (117-161)||(20611502-20611546)
[»] chr2 (9 HSPs)
chr2 (99-166)||(37182366-37182434)
chr2 (121-159)||(13800877-13800915)
chr2 (117-159)||(29694084-29694126)
chr2 (97-157)||(11952949-11953010)
chr2 (99-159)||(42027110-42027171)
chr2 (97-156)||(21666036-21666096)
chr2 (97-159)||(21190929-21190992)
chr2 (97-159)||(30175519-30175582)
chr2 (97-149)||(45156350-45156403)
[»] chr8 (4 HSPs)
chr8 (101-158)||(38009489-38009547)
chr8 (102-161)||(5973369-5973429)
chr8 (97-159)||(25562016-25562079)
chr8 (117-153)||(41063080-41063116)
[»] chr4 (5 HSPs)
chr4 (97-149)||(17353615-17353668)
chr4 (117-160)||(22076987-22077030)
chr4 (104-159)||(5892812-5892868)
chr4 (97-149)||(22315810-22315863)
chr4 (19-51)||(37746847-37746879)
[»] chr7 (3 HSPs)
chr7 (20-87)||(9021926-9021993)
chr7 (97-153)||(7398162-7398219)
chr7 (121-159)||(27237785-27237823)
[»] chr1 (1 HSPs)
chr1 (97-159)||(39135065-39135128)
[»] chr5 (2 HSPs)
chr5 (102-159)||(24395445-24395503)
chr5 (162-224)||(24091542-24091603)
[»] chr3 (1 HSPs)
chr3 (18-51)||(8420273-8420306)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 4036925 - 4036711
Alignment:
Q  21 cacctaacaccaaaagcaagataacccaattagtgggatactactcagtagtactactagactataannnnnnnnnaggctcatacattggggaggcc-a 119  Q
    |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| | ||||||         |||||||||||||||||||||| |    
T  4036925 cacctaacaccaaaagcaagatgacccaattagtgggatagtacttagtagtactactgggctataattttttttgaggctcatacattggggaggccca 4036826  T
Q  120 gctccattgagctttttgcacaccccaaggtccggccctgctcataaaaatagagaatacatcaagtgtaacagagatgagaggtatattggtaatatgt 219  Q
     ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  4036825 actccattgagcgttttgcacaccccaaggtccgaccctgctcataaaaatagagaatacatcaagtgtaacagagaggagaggtatatttgtaatatgt 4036726  T
Q  220 actgtggtatttaat 234  Q
    |||||||||||||||    
T  4036725 actgtggtatttaat 4036711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 20611546 - 20611502
Alignment:
Q  117 ccagctccattgagctttttgcacaccccaaggtccggccctgct 161  Q
    |||||||||||||||| |||||||||||||||||||| |||||||    
T  20611546 ccagctccattgagctctttgcacaccccaaggtccgaccctgct 20611502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 37182434 - 37182366
Alignment:
Q  99 gctcatacattggggagg-ccagctccattgagctttttgcacaccccaaggtccggccctgctcataa 166  Q
    |||| ||| ||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  37182434 gctcttaccttggggaggtccagctccattgagctctttgcacaccccaaggtccgaccctgcttataa 37182366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 13800877 - 13800915
Alignment:
Q  121 ctccattgagctttttgcacaccccaaggtccggccctg 159  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  13800877 ctccattgagctttttgcacaccccaaggtccgaccctg 13800915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 29694126 - 29694084
Alignment:
Q  117 ccagctccattgagctttttgcacaccccaaggtccggccctg 159  Q
    |||||||||||||||| ||||||||||||||||| ||||||||    
T  29694126 ccagctccattgagctctttgcacaccccaaggtgcggccctg 29694084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 11952949 - 11953010
Alignment:
Q  97 aggctcatacattggggaggcc-agctccattgagctttttgcacaccccaaggtccggccc 157  Q
    |||||||||| ||||||||||| || |||||||||||  |||||||||||||||| ||||||    
T  11952949 aggctcataccttggggaggcccagttccattgagctccttgcacaccccaaggttcggccc 11953010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 42027171 - 42027110
Alignment:
Q  99 gctcatacattggggaggc-cagctccattgagctttttgcacaccccaaggtccggccctg 159  Q
    |||||||||||| |||||| | ||||||||||||  ||| ||||||||||||||||||||||    
T  42027171 gctcatacattgaggaggctcggctccattgagcggtttacacaccccaaggtccggccctg 42027110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 21666036 - 21666096
Alignment:
Q  97 aggctcatacattggggaggcc-agctccattgagctttttgcacaccccaaggtccggcc 156  Q
    |||| ||||| ||||||||||| || |||||||||||  ||||||||||||||||||||||    
T  21666036 aggcccataccttggggaggcccagttccattgagctccttgcacaccccaaggtccggcc 21666096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 21190929 - 21190992
Alignment:
Q  97 aggctcatacattggggaggcc-agctccattgagctttttgcacaccccaaggtccggccctg 159  Q
    |||| ||||| ||||||||||| |||||||||||||| ||||||| |||||||| |||| ||||    
T  21190929 aggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagggccgggcctg 21190992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 30175582 - 30175519
Alignment:
Q  97 aggctcatacattggggaggcc-agctccattgagctttttgcacaccccaaggtccggccctg 159  Q
    |||| ||||| ||||||||||| |||||||||||||| ||||||| |||||||| |||| ||||    
T  30175582 aggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagggccgggcctg 30175519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 45156350 - 45156403
Alignment:
Q  97 aggctcatacattggggaggcc-agctccattgagctttttgcacaccccaagg 149  Q
    |||| ||||| ||||||||||| |||||||||||||| ||||||| ||||||||    
T  45156350 aggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagg 45156403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 38009489 - 38009547
Alignment:
Q  101 tcatacattggggaggc-cagctccattgagctttttgcacaccccaaggtccggccct 158  Q
    |||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  38009489 tcataccttggggaggctcagctccattgagctctttacacaccccaaggtccggccct 38009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 5973369 - 5973429
Alignment:
Q  102 catacattggggaggcc-agctccattgagctttttgcacaccccaaggtccggccctgct 161  Q
    ||||| ||||||||||| |||||||||||||  |||||| ||||||||||| |||||||||    
T  5973369 cataccttggggaggcccagctccattgagcggtttgcagaccccaaggtctggccctgct 5973429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 25562016 - 25562079
Alignment:
Q  97 aggctcatacattggggaggccagct-ccattgagctttttgcacaccccaaggtccggccctg 159  Q
    |||| ||||| ||||||||||| | | ||||||||||  |||||||||||||||||||||||||    
T  25562016 aggcccatactttggggaggcctgattccattgagctccttgcacaccccaaggtccggccctg 25562079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 41063116 - 41063080
Alignment:
Q  117 ccagctccattgagctttttgcacaccccaaggtccg 153  Q
    |||||||||||||||  ||||||||||||||||||||    
T  41063116 ccagctccattgagcggtttgcacaccccaaggtccg 41063080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 17353668 - 17353615
Alignment:
Q  97 aggctcatacattggggaggc-cagctccattgagctttttgcacaccccaagg 149  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  17353668 aggctcatacattggggaggctcagctccattgagctgtttgcaccccccaagg 17353615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 22077030 - 22076987
Alignment:
Q  117 ccagctccattgagctttttgcacaccccaaggtccggccctgc 160  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  22077030 ccagctccattgagcggtttgcacaccccaaggtccggccctgc 22076987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 5892868 - 5892812
Alignment:
Q  104 tacattggggaggcc-agctccattgagctttttgcacaccccaaggtccggccctg 159  Q
    ||||||| ||||||| ||||||||||| || |||||||||| |||||||||||||||    
T  5892868 tacattgaggaggcctagctccattgaactgtttgcacacctcaaggtccggccctg 5892812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 22315810 - 22315863
Alignment:
Q  97 aggctcatacattggggagg-ccagctccattgagctttttgcacaccccaagg 149  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||| ||| ||||    
T  22315810 aggctcataccttggggaggtccagctccattgagctgtttgcaccccctaagg 22315863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 37746847 - 37746879
Alignment:
Q  19 cccacctaacaccaaaagcaagataacccaatt 51  Q
    |||||||||||||||||||||||| ||||||||    
T  37746847 cccacctaacaccaaaagcaagatgacccaatt 37746879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 9021926 - 9021993
Alignment:
Q  20 ccacctaacaccaaaagcaagataacccaattagtgggatactactcagtagtactactagactataa 87  Q
    |||||||||||||||||||||| ||| |||||| |||| || |||| |||||||||||| | ||||||    
T  9021926 ccacctaacaccaaaagcaagagaactcaattattggggtagtacttagtagtactactgggctataa 9021993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 7398219 - 7398162
Alignment:
Q  97 aggctcatacattggggaggc-cagctccattgagctttttgcacaccccaaggtccg 153  Q
    |||| ||||| |||||||||| |||||||||||||||  |||||||||||||||||||    
T  7398219 aggcccataccttggggaggctcagctccattgagctcgttgcacaccccaaggtccg 7398162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 27237785 - 27237823
Alignment:
Q  121 ctccattgagctttttgcacaccccaaggtccggccctg 159  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  27237785 ctccattgagctctttgcacaccccaaagtccggccctg 27237823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 39135065 - 39135128
Alignment:
Q  97 aggctcatacattggggaggcc-agctccattgagctttttgcacaccccaaggtccggccctg 159  Q
    |||| ||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  39135065 aggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctg 39135128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 24395503 - 24395445
Alignment:
Q  102 catacattggggaggcc-agctccattgagctttttgcacaccccaaggtccggccctg 159  Q
    ||||| ||||||||||| |||||||||||||| ||||||| ||| ||||||||||||||    
T  24395503 cataccttggggaggcctagctccattgagctctttgcacgccctaaggtccggccctg 24395445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 24091603 - 24091542
Alignment:
Q  162 cataaaaatagagaatacatc-aagtgtaacagagatgagaggtatattggtaatatgtactgt 224  Q
    ||||||| ||||||||||||| |||||||||||||| ||| |||||||  ||||||||||||||    
T  24091603 cataaaactagagaatacatccaagtgtaacagagaggaggggtatat--gtaatatgtactgt 24091542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 8420306 - 8420273
Alignment:
Q  18 acccacctaacaccaaaagcaagataacccaatt 51  Q
    |||||||||||||||||||||||| |||||||||    
T  8420306 acccacctaacaccaaaagcaagagaacccaatt 8420273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University