View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_high_6 (Length: 534)
Name: NF21585_high_6
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Original strand, 55178617 - 55179123
Alignment:
| Q |
19 |
atggtaaactagtactaattagcagcagtgatgttatgagtctgacctgaagagaattgacaagtgcaagagttgagaacctcaaagataaaccacttgc |
118 |
Q |
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| T |
55178617 |
atggtaaactagtactaattagcagcagtgatgttatgagtccgacctgaagagaattgacaagtgcaagagttgagaacctcaaagataaaccacttgc |
55178716 |
T |
|
| Q |
119 |
agctactgaaactaataacatttttatagctctggccctcaatttgagatgaactgtgtcgattgttattatatttgtgtgttgagcgatccggtaagtt |
218 |
Q |
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| T |
55178717 |
agctactgaaactaataacatttttatagctctggccctcaatttgagatgaactgtgtcgattgttattatatttgtgtgttgagcgatccggtaagtt |
55178816 |
T |
|
| Q |
219 |
cattacccattgtacaacagacatgtcccttgaaatttctgtatgcatcctgcggagaagtggccaaccaagcttctgtgatgttgataatcttgatgac |
318 |
Q |
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| T |
55178817 |
cattacccattgtacaacagacatgtcccttgaaatttctgtatgcatcctgcggagaagtggccaaccaagcttctgtgatgttgataatcttgatgac |
55178916 |
T |
|
| Q |
319 |
actttcatctcttctttaaatgtttcttcctcccattttctgttaccttcttggcttttcgatttctcatcctcattctccgagtggtctgtgccagatg |
418 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55178917 |
actttcatttctcctttaaatgtttcttcctcccattttctgttaccttcttggcttttcgatttctcatcctcattctctgagtggtctgtgccagatg |
55179016 |
T |
|
| Q |
419 |
cagactggaccaccgtgctgataagactcggtctaggatcctctataatgccacttagcataatcatattcatagttggaaacaaatttgctatagtaga |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55179017 |
cagactggaccaccgtgctgataagactcggtctaggatcctctataatgccacctagcataatcatattcatagttggaaacaaatttgctatagtaga |
55179116 |
T |
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| Q |
519 |
ttttctt |
525 |
Q |
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| T |
55179117 |
ttttctt |
55179123 |
T |
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