View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_11 (Length: 486)
Name: NF21585_low_11
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 27174907 - 27174559
Alignment:
| Q |
1 |
ttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatggttttggttctttaatttccatcatattcttatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27174907 |
ttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatgtttttggttctttaatttccatcatattcttat-- |
27174810 |
T |
|
| Q |
101 |
tcttatttgatgtagtctcagatgtcttttgcggatttcaagttcatgattcttgtaaatattgtgcttgacaccgcattgaatagacatgattcaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27174809 |
------ttgatgtagtctcagatgtcttttgcggatttcaagttcatgattcttgtaaatattgtgcttgacaccgcattgaatagacatgattcaactt |
27174716 |
T |
|
| Q |
201 |
tggcttgccttgtcttcttttctttgtgaatcttcatttgagccgctattggattttccggcaatgactccacttcatattcttcttccacaacttccca |
300 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27174715 |
tggcctgccttgtcttcttttctttatgaatcttcatttgagccgccattggattttccggcaatgactccacttcatattcttcttccacaacttccca |
27174616 |
T |
|
| Q |
301 |
aaggtctaaggcttcaagatacgttttcatcacaaaaatgggtggagaaggcagaag |
357 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
27174615 |
aaggtctaaggcttcaagatatgttttcatcacaaaaatgggtggagaagggagaag |
27174559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 27231712 - 27231364
Alignment:
| Q |
1 |
ttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatggttttggttctttaatttccatcatattcttatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27231712 |
ttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatgtttttggttctttaatttccatcatattcttat-- |
27231615 |
T |
|
| Q |
101 |
tcttatttgatgtagtctcagatgtcttttgcggatttcaagttcatgattcttgtaaatattgtgcttgacaccgcattgaatagacatgattcaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27231614 |
------ttgatgtagtctcagatgtcttttgcggatttcaagttcatgattcttgtaaatattgtgcttgacaccgcattgaatagacatgattcaactt |
27231521 |
T |
|
| Q |
201 |
tggcttgccttgtcttcttttctttgtgaatcttcatttgagccgctattggattttccggcaatgactccacttcatattcttcttccacaacttccca |
300 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27231520 |
tggcctgccttgtcttcttttctttatgaatcttcatttgagccgccattggattttccggcaatgactccacttcatattcttcttccacaacttccca |
27231421 |
T |
|
| Q |
301 |
aaggtctaaggcttcaagatacgttttcatcacaaaaatgggtggagaaggcagaag |
357 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
27231420 |
aaggtctaaggcttcaagatatgttttcatcacaaaaatgggtggagaagggagaag |
27231364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 393 - 486
Target Start/End: Complemental strand, 27174523 - 27174430
Alignment:
| Q |
393 |
atgtactcaattcacatatcccttaagaagataatctccgataccaatttgttggttttgaagagatatgagagaaatagtaatatggaaatga |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27174523 |
atgtactcaattcacatatcccttaagaagataatctccgataccaatttgttggttttgaagagatatgagagaaatagtaatatggaaatga |
27174430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 393 - 486
Target Start/End: Complemental strand, 27231328 - 27231235
Alignment:
| Q |
393 |
atgtactcaattcacatatcccttaagaagataatctccgataccaatttgttggttttgaagagatatgagagaaatagtaatatggaaatga |
486 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27231328 |
atgtactcaattcacatatcccttaagaagataatctccgataccaatttgttggttttgaagagatatgagagaaatagtaatatggaaatga |
27231235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 31233435 - 31233503
Alignment:
| Q |
401 |
aattcacatatcccttaagaagataatctccgataccaatttgttggttttgaagagatatgagagaaa |
469 |
Q |
| |
|
|||||||| |||||||||||| |||| ||| | || ||||||||||||||| ||| ||||||||||||| |
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| T |
31233435 |
aattcacagatcccttaagaaaataagctctgctatcaatttgttggttttaaagggatatgagagaaa |
31233503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 17532726 - 17532647
Alignment:
| Q |
16 |
ccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatggttttggttctttaatttccatcatattctt |
96 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| | ||||| | ||||| |||||||||||| |||||| |||||||||| |
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| T |
17532726 |
ccttcatttttagcatctcgaactcttgaatcaggttgagtttt-gcatgtttttggttctttcatttccctcatattctt |
17532647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 14805661 - 14805755
Alignment:
| Q |
1 |
ttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatggttttggttctttaatttccatcatattctt |
96 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||||||||| |||||| | ||||| | ||||| |||||||||||| |||||| || ||||||| |
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| T |
14805661 |
ttatggtttccgcctccttcatttttagcatctcgaactcttgaatcaggttgagt-tttgcatgtttttggttctttcatttccctcgtattctt |
14805755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 15252655 - 15252749
Alignment:
| Q |
1 |
ttatggtttctgccaccttcattttcagcatctcgaactcccgaatcaaggtgagtatccgcatggttttggttctttaatttccatcatattctt |
96 |
Q |
| |
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|||||||||| ||| |||||||||| |||||||||||||| |||||| | ||||| | ||||| |||||||||||| |||||| || ||||||| |
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| T |
15252655 |
ttatggtttccgcctccttcatttttagcatctcgaactcttgaatcaggttgagt-tttgcatgtttttggttctttcatttccctcgtattctt |
15252749 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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