View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_13 (Length: 435)
Name: NF21585_low_13
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 30768729 - 30769131
Alignment:
| Q |
18 |
ggatgattacttgcttaaccccaataaggtacaagacattgattggcatttccatgtttctttttagatcatatacaaaatatctatatcaaatggttat |
117 |
Q |
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| T |
30768729 |
ggatgattacttgcttaaccccaataaggtacaagacattgattggcatttccatgtttctttttagatcatatacaaaatatctatatcaaatggttat |
30768828 |
T |
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| Q |
118 |
tagtaaccacttgatgcttctttgtataatattatcattctaacctttgttgttttctaatatgaataggctcttgttctattaatttatta----tgat |
213 |
Q |
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| T |
30768829 |
tagtaaccacttgatgcttctttgtataatattatcattctaacctttgttgttttctaatatgaataggctcttgttctattaatttattatgattgat |
30768928 |
T |
|
| Q |
214 |
tatactgagaggtaaccttgaaagcttatttcgattaaatacatcactgatttgtgtattannnnnnnattcttatgtagtatatcctcgatacgaagat |
313 |
Q |
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| T |
30768929 |
tatactgagaggtaacattgaaagcttatttcgattaaatacatcactgatttgtgtattatttttttattcttatgtagtatatcctcgatacgaagat |
30769028 |
T |
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| Q |
314 |
ggtatttcctgctcctaagaagccccaggaacgtgttgatcttattgcatatctgaaataggatgcttgaaaatgattgaagttatgtatcatatgtagt |
413 |
Q |
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| T |
30769029 |
ggtatttcctgctcttaagaagccccaggaacgtgttgatcttattgcatatctgaaataggatgcttgaaaatgattgaagttatgtatcatatgtagt |
30769128 |
T |
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| Q |
414 |
ata |
416 |
Q |
| |
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| T |
30769129 |
ata |
30769131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 30772593 - 30772722
Alignment:
| Q |
20 |
atgattacttgcttaaccccaataaggtacaagacattgattggcatttccatgtttctttttagatcatatacaaaatatctatatcaaatggttatta |
119 |
Q |
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||||||||||||| |||||||| ||||||||| ||||||||||| ||||| | ||| ||| ||||| ||| ||||| ||||||||||||||||||| |
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| T |
30772593 |
atgattacttgctgaaccccaagaaggtacaacacattgattggtatttcagtatttatttctagattgcataaaaaatgtctatatcaaatggttattt |
30772692 |
T |
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| Q |
120 |
gtaaccacttgatgcttctttgtataatat |
149 |
Q |
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| | || |||||||||||||||| ||||| |
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| T |
30772693 |
attatcatttgatgcttctttgtacaatat |
30772722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 30772883 - 30772945
Alignment:
| Q |
309 |
aagatggtatttcctgctcctaagaagccccaggaacgtgttgatcttattgcatatctgaaa |
371 |
Q |
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|||||||| ||||||| || ||||||||| || ||||||| |||||||||||||||||||||| |
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| T |
30772883 |
aagatggtttttcctggtcttaagaagcctcaagaacgtgctgatcttattgcatatctgaaa |
30772945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 1793114 - 1793175
Alignment:
| Q |
309 |
aagatggtatttcctgctcctaagaagccccaggaacgtgttgatcttattgcatatctgaa |
370 |
Q |
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| T |
1793114 |
aagatggtatttcccggtctaaagaaaccccaagaacgcgctgatcttattgcatatctgaa |
1793175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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