View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_18 (Length: 336)
Name: NF21585_low_18
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 5 - 317
Target Start/End: Complemental strand, 3304267 - 3303955
Alignment:
| Q |
5 |
ccatctacataggcctttgcatgccacggacttattaccttaatcatattttgcaatatagtcatattttcaatgttgactacgaagtaaaacgtggact |
104 |
Q |
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| T |
3304267 |
ccatctacataggcctttgcatgccacggacttattaccttcatcatattttgcaatatagtcatattttcaatgttgactacgaagtaaaacgtggact |
3304168 |
T |
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| Q |
105 |
taattgtttacaaaggatggtgagagatgtggaaaagataaataaaattgatactcaacttgaagatttcagaaaaagatcaaagttttctgatcaaatt |
204 |
Q |
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| T |
3304167 |
taattgtttacaaaggatggtgagagatgtggaaaagataaataaaattgatagtcaaattgaagatttcagaaaaagatcaaagttttctgatcaaatt |
3304068 |
T |
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| Q |
205 |
ttgcataggatttgaaaataaaattctggtacagttgtcagagtcttatggcaatgagatatatcccaagctgcagaagtttgttatttgcatagtatct |
304 |
Q |
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| T |
3304067 |
ttgcataggatttgaaaataaaattctggtacagttgtcagagtcttatggcaatgagatatatcccaagctgcagaagtttgttatttgcatagtatct |
3303968 |
T |
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| Q |
305 |
tttgccacaggtt |
317 |
Q |
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| T |
3303967 |
tttgcctcaggtt |
3303955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 3292318 - 3292207
Alignment:
| Q |
61 |
tatagtcatattttcaatgttgactacgaagtaaaacgtggacttaattgtttacaaaggatggtgagagatgtggaaaagataaataaaattgatactc |
160 |
Q |
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| T |
3292318 |
tatagtcataatttcaaagttgactatgaa-taaaatgtgaactagattgtctaaaaaggatggtgagagatgtggaaaagataaataagattgatgatc |
3292220 |
T |
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| Q |
161 |
aacttgaagattt |
173 |
Q |
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| T |
3292219 |
aaattgtagattt |
3292207 |
T |
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