View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_2 (Length: 731)
Name: NF21585_low_2
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 10 - 565
Target Start/End: Complemental strand, 9283827 - 9283261
Alignment:
| Q |
10 |
atgaataaactactttggaagataagagttgaaagggctatctaatgagagacatgaattgaatgaaccactcannnnnnnaggcacaacatcatatgaa |
109 |
Q |
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| T |
9283827 |
atgaataaactactttggaagataagagttgaaagggctatttaatgagagacatgaattgaatgaaccactcatttttttaggcacaacatcatatgaa |
9283728 |
T |
|
| Q |
110 |
tgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttgcaacaactatttattttgc |
209 |
Q |
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| T |
9283727 |
tgataaaccatcatcatatgagagacatgaatgaaccactgctttgggatatgagagttgaaaatgatagttgcagacttgcaacaactatttattttgc |
9283628 |
T |
|
| Q |
210 |
gttaagtggttatgacacaacagcttacatttacaatattagcagtaaggatgataattagaatctagactttctgtcatatattgttgcagcaactatt |
309 |
Q |
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| T |
9283627 |
gttaagtggttatgacacaacagcttacatttacaatattagcagtaaggatgataattagaatctagactttctgtcatatattgttgcagcaactatt |
9283528 |
T |
|
| Q |
310 |
tatttagctttattttattgttgttgaaacagtcattatgaattacttttgttctctgtacattttggtgtgttttgtctctttgatcgtgtcgaaatgt |
409 |
Q |
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| T |
9283527 |
tatttagctttattttattgttgttgaaacagtcattatgaattacttttgttctctgtacattttggt-agttttgtctctttgatcgtgtcgaaatgt |
9283429 |
T |
|
| Q |
410 |
tgttgctct---atgcggctcgattttgtgatctgctagtcagcttagcttctgtttcatgcatgttt---------------gtatggtgtgagtgacc |
491 |
Q |
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| T |
9283428 |
tgttgctctatgatgcggctcgattttgtgatctgctagtcagcttagcttctgtttcatgcatgtttcagtggttttagcaggtatggtgtcagtggcc |
9283329 |
T |
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| Q |
492 |
ttgagttttggtgtatgtaagagtatttttatttttagtaggttgtgttcttttaacaaaaaagattaaacttg |
565 |
Q |
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| T |
9283328 |
ttgagttttggtgtatgtaagag------tatttttagtaggttgtgttcttttaacaaaaaagattaaacttg |
9283261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 605 - 714
Target Start/End: Complemental strand, 9283279 - 9283170
Alignment:
| Q |
605 |
acaaaaaagattaaacttgtaacaatttgcataagtttagacaaatgaacagccaggacaatatgacttcgcaaggttctaactgtagttcgataactat |
704 |
Q |
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| T |
9283279 |
acaaaaaagattaaacttgtaacaatttgcataagtttagacaaatgattagccaggacaatatgacttcgcaaggttctaattgtagttcgataactat |
9283180 |
T |
|
| Q |
705 |
tatagataag |
714 |
Q |
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| |||||||| |
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| T |
9283179 |
tctagataag |
9283170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 35051298 - 35051407
Alignment:
| Q |
91 |
aggcacaacatcatatgaatgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttg |
190 |
Q |
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|||||||||| ||||||| ||||||||||||| || ||| |||||||||||||| || |||||||| |||||||||||| ||||| |||||||||||| |
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| T |
35051298 |
aggcacaacaccatatgattgataaaccatcagaat--gag-gacatgaatgaaccacttctttgggagatgagagttgaagatgattgttgcagacttg |
35051394 |
T |
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| Q |
191 |
caacaactattta |
203 |
Q |
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|| ||||||||| |
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| T |
35051395 |
cagaaactattta |
35051407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 53324324 - 53324215
Alignment:
| Q |
91 |
aggcacaacatcatatgaatgataaaccatcatcatatgagagacatgaatgaaccgctgctttgggatatgagagttgaaaatgatagttgcagacttg |
190 |
Q |
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|||||||||| ||||||| |||||||||||||| || ||| |||||||||||||| || |||||| | | |||||||||| ||||| ||||||||||| |
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| T |
53324324 |
aggcacaacaccatatgattgataaaccatcataat--gag-gacatgaatgaaccacttctttggaagacgagagttgaagatgattgttgcagacttt |
53324228 |
T |
|
| Q |
191 |
caacaactattta |
203 |
Q |
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|| ||||||||| |
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| T |
53324227 |
cagaaactattta |
53324215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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