View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_22 (Length: 310)
Name: NF21585_low_22
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 32241100 - 32241167
Alignment:
| Q |
111 |
gtgtttagttatgaagcatgatcacacaataagaaacttaatcattaattaaaaaagagttgtgacat |
178 |
Q |
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| T |
32241100 |
gtgtttagttatgaagcatgatcacacaataagaaacttaatcattaattaaaaaagagttgtgacat |
32241167 |
T |
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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 32241233 - 32241301
Alignment:
| Q |
242 |
ggagagaattcatactcataagatgataataaacatggtcgaatgctaagaatgaagatattatatata |
310 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32241233 |
ggagagaattcattctcataagatgataagaaacatggtcgaatgctaagaatgaagatattatatata |
32241301 |
T |
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