View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_24 (Length: 305)
Name: NF21585_low_24
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_24 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 35 - 296
Target Start/End: Complemental strand, 6326393 - 6326125
Alignment:
| Q |
35 |
ttccaaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctacaatt |
134 |
Q |
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| T |
6326393 |
ttccaaaactcaactcttctataagaaaagcaatattgaagaatgtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctacaatt |
6326294 |
T |
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| Q |
135 |
ccaaatgcaacttcaac------ttcatcagattcaacaaggtaaataacttcaattatcaatcactactcaaacattaacttactctgtttccccnnnn |
228 |
Q |
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| T |
6326293 |
gcaaatgcaacttcaacttcaacttcatcagcttcaacaaggtaaataacttcaattttcaatcactactcaaacattaacttactctgtttcccctttt |
6326194 |
T |
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| Q |
229 |
nnnnagtagaaccctgtttttccattcaag-nnnnnnnnnagtcaattgaagttcaatactagtataat |
296 |
Q |
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| T |
6326193 |
ttttagtagaaccctgtttttccattcaagatttttttttagtcaattgaagttcaatactagtataat |
6326125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 6333894 - 6333717
Alignment:
| Q |
17 |
ttttcttcatatctctttttccaaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaag---agtttaacgaacaatg |
113 |
Q |
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| T |
6333894 |
ttttcttcatatctctttttccaaaactcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaagtttagtttgaagaacaatg |
6333795 |
T |
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| Q |
114 |
gctgaattagaagc------tacaattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaatt |
185 |
Q |
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| T |
6333794 |
gctgaattaggagctacaattacaattccaaatgcaacttcaacttcatcagcttcaacaaggtaaataacttcaatt |
6333717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 6242427 - 6242582
Alignment:
| Q |
60 |
aaaagcaatattgaagaatgtgttgtactcatcaaaag---agtttaacgaacaatggctgaattagaagctacaattccaaatgc------aacttcaa |
150 |
Q |
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| T |
6242427 |
aaaagcaatattgaagaatgtgttgtacttatcaaaagttaagtttgaagaacaacggcagaattaggagctacaattccaaatgcaacttgaacttgaa |
6242526 |
T |
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| Q |
151 |
cttcatcagattcaacaaggtaaataacttcaattatcaatcactactcaaacatt |
206 |
Q |
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| T |
6242527 |
cttcatcggattcaataaggtaaataacttcaattttcaatcactactcaaacatt |
6242582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 6220904 - 6220993
Alignment:
| Q |
35 |
ttccaaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatcaaaa---gagtttaacgaacaatggctgaatt |
121 |
Q |
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| T |
6220904 |
ttccaaacatcaactattatataagtaaaccaatattgaagcatgtgttgtactcatcaaaagttgagtttgaagaacaatggcagaatt |
6220993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 606 - 810
Alignment:
| Q |
17 |
ttttcttcatatctctttttccaaacctcaactattatataagaaaagcaatattgaagaatgtgttgtactcatca---aaag---agtttaacgaaca |
110 |
Q |
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| T |
606 |
ttttcttcatagctctttttccaaacctcgactct------ataaaagcaatattgaagaatgtgttgtactcatcatcaaaagttgagtttgaagaaca |
699 |
T |
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| Q |
111 |
atggctgaattagaagctacaattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattatcaatcactactcaaacattaact |
210 |
Q |
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| T |
700 |
atggcagaattaggagctacaattccaaatgcaacttcaacttcatcagattcaacaaggtaaataacttcaattttcaatcactactcaaacattaact |
799 |
T |
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| Q |
211 |
tactctgtttc |
221 |
Q |
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||||||||||| |
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| T |
800 |
tactctgtttc |
810 |
T |
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