View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_29 (Length: 298)
Name: NF21585_low_29
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 157 - 288
Target Start/End: Complemental strand, 1857812 - 1857681
Alignment:
| Q |
157 |
gcatatctccgtgaaactcacgtgatcaccggcgcttctttctttaaatccatcgacgatttctccgtcaccggaaccgctgcatatctcgccgaaaaac |
256 |
Q |
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| T |
1857812 |
gcatatctccgtgaaactcacgtgatcaccggcgcttctttctttaaatccatcgacgatttctccgtcaccggaaccgctgcatatctcgccgaaaaac |
1857713 |
T |
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| Q |
257 |
caccataaccgtaaaaattaccatcttctctg |
288 |
Q |
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| T |
1857712 |
caccataaccgtaaaaattaccatcttctctg |
1857681 |
T |
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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 1857950 - 1857890
Alignment:
| Q |
18 |
acaaactcccaaagattattctaatttctcccaataannnnnnnctcaatgcaatgtgcat |
78 |
Q |
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| T |
1857950 |
acaaactcccaaagattattctaatttctcccattaatttttttctcaatgcaatgtgcat |
1857890 |
T |
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