View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_33 (Length: 282)
Name: NF21585_low_33
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 53 - 262
Target Start/End: Original strand, 11861569 - 11861778
Alignment:
| Q |
53 |
cttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaactt |
152 |
Q |
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||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
11861569 |
cttccatggggagttgaaaatgtgaacactttgaaagacttaaggatttatgattgtcatggtttaacttttttaccagaaagtataggtaacctcactt |
11861668 |
T |
|
| Q |
153 |
cacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattg |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11861669 |
cacttgaaaaactggttctttctgaatgcagaaagttagattctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattg |
11861768 |
T |
|
| Q |
253 |
ccctttgtta |
262 |
Q |
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|||||||||| |
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| T |
11861769 |
ccctttgtta |
11861778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 53 - 262
Target Start/End: Original strand, 11829470 - 11829679
Alignment:
| Q |
53 |
cttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaactt |
152 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11829470 |
cttccatggggagttgaaaacgtgaaaactttgaaagacttgaggatttatgattgtcatggtttaacttctttaccagaaagtataggtaacctcactt |
11829569 |
T |
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| Q |
153 |
cacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattg |
252 |
Q |
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| T |
11829570 |
cacttgaaagactggttctttctgaatgcagaaatttagattctcttcccaaaggaatggaaatgcttcagtctctaaatactttgattattatggattg |
11829669 |
T |
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| Q |
253 |
ccctttgtta |
262 |
Q |
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|||||||||| |
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| T |
11829670 |
ccctttgtta |
11829679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 91 - 262
Target Start/End: Original strand, 12040402 - 12040573
Alignment:
| Q |
91 |
cttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagtta |
190 |
Q |
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||||||| ||||||||||||| |||||||||||| | || ||||| ||| | ||| | ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12040402 |
cttaaggctttatgattgccagggtttaacttctctcccggaaagcatatgcaacttcgcttcacttgaaaaactggttctttcggaatgcagaaagtta |
12040501 |
T |
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| Q |
191 |
ggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
262 |
Q |
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| T |
12040502 |
gattctctgcccaaaggaatggaaacgctacagtctctaaagactttgattattagggactgcccgttgtta |
12040573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 67 - 262
Target Start/End: Complemental strand, 11900935 - 11900740
Alignment:
| Q |
67 |
tgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactg |
166 |
Q |
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||||||| |||| ||||| | || |||||| ||||||||||||||||| ||||| || ||||||| ||||||||||| ||||| |||| ||||| |
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| T |
11900935 |
tgaaaacttgaactctttgcatgatttaaggctttatgattgccatggtctaactgacctaacagaaagcataggtaacctcacttcccttggcaaacta |
11900836 |
T |
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| Q |
167 |
gttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
262 |
Q |
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||| |||||||||||||||| |||| || ||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11900835 |
gttatttctgaatgcagaaatttagattatctgcccaaggggatggaaatgctacagtctctaaatactttgattattatggattgccctttgtta |
11900740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 262
Target Start/End: Original strand, 11733276 - 11733468
Alignment:
| Q |
70 |
aaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggtt |
169 |
Q |
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|||| ||||| | |||||||| ||||||||||||||||||| | |||||||| ||||||||||| |||| || || ||||||||| |||||||| |
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| T |
11733276 |
aaacttgaaatcattgaaagatttaaggatttatgattgccctagtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggtt |
11733375 |
T |
|
| Q |
170 |
ctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
262 |
Q |
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|||||||||||||||| | | ||||||||||||||||||| |||||| ||| ||| ||| ||||| |||||||| ||||| |||||| |
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| T |
11733376 |
ctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgatcattatggactgccccttgtta |
11733468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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