View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_37 (Length: 262)
Name: NF21585_low_37
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 34793416 - 34793664
Alignment:
| Q |
1 |
cacactgcaacaaccactactcaaactcatagctttacgtatcttatcaaccaatgcagcagattcctcttctctaataaactgtactgattgcaccctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34793416 |
cacactgcaacaaccactactcaaactcatagctttacgtatcttatcaaccaatgcagcagattactcttctctaataaactgtactgattgcaccctt |
34793515 |
T |
|
| Q |
101 |
ttctgactcaacaattcattcacacacagtttctttttctgtctccatgtatggccataagatgaaaacgcaatgtccttaccaccatagaatagggctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34793516 |
ttctgactcaacaattcattcacacacagtttctttttctgtctccatgtatggccataagatgaaaacgcaatgtccttaccaccatagaataaggctt |
34793615 |
T |
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| Q |
201 |
ttgtcgatgtcgtgcttggtcggttcgcaaaaactatgccatgtgtttg |
249 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34793616 |
ttgtcaatgtcgtgcttggtcggttcgcaaaaactatgccatgtgtttg |
34793664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 34416992 - 34416752
Alignment:
| Q |
9 |
aacaaccactactcaaactcatagctttacgtatcttatcaaccaatgcagcagattcctcttctctaataaactgtactgattgcacccttttctgact |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34416992 |
aacaaccattactcaaactcatagctttacgtatcttatcaaccaatgatgcagcttcctcttctctaataaactgtattgattgcacccttttctgact |
34416893 |
T |
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| Q |
109 |
caacaattcattcacacacagtttctttttctgtctccatgtatggccataagatgaaaacgcaatgtccttaccaccatagaatagggcttttgtcgat |
208 |
Q |
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|||||||||| |||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||| ||||||| || | |||||| ||| |
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| T |
34416892 |
caacaattcaatcacacacagtttcctcttctgtctccatgtatcaccataagatgcaaacgcaatgtccttacatccatagagtaagttttttgttgat |
34416793 |
T |
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| Q |
209 |
gtcgtgcttggtcggttcgcaaaaactatgccatgtgtttg |
249 |
Q |
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||| ||| ||||||| |||||||||| || |||||||||| |
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| T |
34416792 |
gtcatgcatggtcggctcgcaaaaacagtgtcatgtgtttg |
34416752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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