View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21585_low_38 (Length: 256)

Name: NF21585_low_38
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21585_low_38
NF21585_low_38
[»] chr8 (1 HSPs)
chr8 (4-241)||(39379854-39380092)
[»] chr3 (2 HSPs)
chr3 (18-120)||(53631523-53631625)
chr3 (34-120)||(55439043-55439129)
[»] scaffold0294 (1 HSPs)
scaffold0294 (13-120)||(14394-14501)
[»] chr6 (2 HSPs)
chr6 (34-120)||(14505737-14505823)
chr6 (18-106)||(1948229-1948316)
[»] chr4 (2 HSPs)
chr4 (35-120)||(6482390-6482475)
chr4 (17-118)||(19534082-19534183)
[»] chr2 (2 HSPs)
chr2 (35-120)||(10208794-10208879)
chr2 (185-237)||(34544592-34544644)
[»] chr1 (2 HSPs)
chr1 (35-120)||(44792644-44792729)
chr1 (204-241)||(42729220-42729257)
[»] chr7 (1 HSPs)
chr7 (202-238)||(8265606-8265642)
[»] chr5 (2 HSPs)
chr5 (35-120)||(38006835-38006920)
chr5 (185-237)||(35583873-35583925)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 39380092 - 39379854
Alignment:
Q  4 tttttaatttttaagcatgacaataggataaggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatcca 103  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |    
T  39380092 tttttaatttttaagcatgacaatgggacaaggtggaggcgtgttttacattcctcgtcctcatactctgctcttaaatacttactcgttaccctatcta 39379993  T
Q  104 tattcaatggggatgagcccggtgaatttgggtatc-ccccatcctcatccccgtggtggatnnnnnnnttgataaaaaatatatttttcagcatcgaac 202  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||||||||       ||||||||||| |||||||||||| ||||||    
T  39379992 tattcaatggggatgagcccggcaaatttgggtatccccccatcctcatctccgtggtggataaaaaaattgataaaaaaaatatttttcagcctcgaac 39379893  T
Q  203 acaatgttgtaatgcattatccaataaagatatgatgtc 241  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  39379892 acaatgttgtaatgcattatccaacaaagagatgatgtc 39379854  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 53631523 - 53631625
Alignment:
Q  18 gcatgacaataggataaggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatccatattcaatggggat 117  Q
    |||||||||| |  ||||||||  ||| |||||||||||||||||||||||||    ||||| |||||||  ||||| | ||| ||||||||||||||||    
T  53631523 gcatgacaatggagtaaggtgggtacgagttttacattcctcgttctcatacctgattcttatatacttatccgttatcatatacatattcaatggggat 53631622  T
Q  118 gag 120  Q
    |||    
T  53631623 gag 53631625  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 55439129 - 55439043
Alignment:
Q  34 aggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatccatattcaatggggatgag 120  Q
    ||||||| ||| |||||||||||||||| | |||| ||   ||| | |||||||| |||||||||| |||||| ||| |||||||||    
T  55439129 aggtggatacgggttttacattcctcgtccccatatccgattctcatatacttacccgttaccctacccatatccaacggggatgag 55439043  T

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Target: scaffold0294 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 14394 - 14501
Alignment:
Q  13 tttaagcatgacaataggataaggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatccatattcaatg 112  Q
    |||| |||||||||| || |||||| | ||||  ||||||||||||||| | ||||| |   ||| | ||||||||| ||||||||| |||||||||| |    
T  14394 tttaggcatgacaatggggtaaggttgggacggattttacattcctcgtccccatactcaattctcatatacttacttgttaccctacccatattcaacg 14493  T
Q  113 gggatgag 120  Q
    ||||||||    
T  14494 gggatgag 14501  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 14505737 - 14505823
Alignment:
Q  34 aggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatccatattcaatggggatgag 120  Q
    |||||| |||| |||||||||||||||| | |||||||   ||| | |||||||| |||||||||| |||||| ||| |||||||||    
T  14505737 aggtggggacgggttttacattcctcgtccccatacccgattctcatatacttacccgttaccctacccatatccaacggggatgag 14505823  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 1948316 - 1948229
Alignment:
Q  18 gcatgacaataggataaggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatccatat 106  Q
    ||||||||||||| || | |||||||| ||||||| || ||| |||||||||| |  || || |||||||| |||||||||| ||||||    
T  1948316 gcatgacaatagggtaggatggagacgagttttacctt-ctctttctcataccttagtcctatatacttacccgttaccctacccatat 1948229  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 6482475 - 6482390
Alignment:
Q  35 ggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatccatattcaatggggatgag 120  Q
    ||||| |||| |||||||||||| ||||| |||||||   ||| | |||||||| |||||||||| |||||| ||| |||||||||    
T  6482475 ggtggggacgggttttacattccccgttcccatacccgattctcatatacttacccgttaccctacccatatccaacggggatgag 6482390  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 19534082 - 19534183
Alignment:
Q  17 agcatgacaataggataaggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatccatattcaatgggga 116  Q
    ||||||||||| || |  ||||| || ||||||||||| || ||||| |||||||   ||| | |||||||||| |||||||| |||||| ||| |||||    
T  19534082 agcatgacaatggggtggggtggggatgtgttttacataccccgttcccatacccgattctcatatacttactcattaccctacccatatccaacgggga 19534181  T
Q  117 tg 118  Q
    ||    
T  19534182 tg 19534183  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 10208879 - 10208794
Alignment:
Q  35 ggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatccatattcaatggggatgag 120  Q
    ||||| |||| ||||||| |||| |||||||||||||   ||| | |||||||| |||||||||| |||||| ||| |||||||||    
T  10208879 ggtggggacgggttttaccttccccgttctcatacccgattctcatatacttacccgttaccctacccatatccaacggggatgag 10208794  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 34544644 - 34544592
Alignment:
Q  185 tatttttcagcatcgaacacaatgttgtaatgcattatccaataaagatatga 237  Q
    |||||||||||  ||| | ||||||||||||||||||||||| ||||| ||||    
T  34544644 tatttttcagccccgagcgcaatgttgtaatgcattatccaacaaagagatga 34544592  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 44792644 - 44792729
Alignment:
Q  35 ggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatccatattcaatggggatgag 120  Q
    ||||| |||| |||||||||||| ||| | |||||||   ||| | |||||||| |||||||||| |||||||||| |||||||||    
T  44792644 ggtggggacgggttttacattccccgtccccatacccgattctcatatacttacccgttaccctacccatattcaacggggatgag 44792729  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 42729257 - 42729220
Alignment:
Q  204 caatgttgtaatgcattatccaataaagatatgatgtc 241  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  42729257 caatgttgtaatgcattatccattaaagagatgatgtc 42729220  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 8265606 - 8265642
Alignment:
Q  202 cacaatgttgtaatgcattatccaataaagatatgat 238  Q
    ||||||||||||||||||||||||| |||||||||||    
T  8265606 cacaatgttgtaatgcattatccaagaaagatatgat 8265642  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 38006920 - 38006835
Alignment:
Q  35 ggtggagacgtgttttacattcctcgttctcataccctgctcttaaatacttactcgttaccctatccatattcaatggggatgag 120  Q
    ||||| |||| |||||||||||| ||||| |||||||   ||||| |||||||  |||||||||| |||||  ||| |||||||||    
T  38006920 ggtggggacgggttttacattccccgttcccatacccgattcttatatacttatccgttaccctacccatacccaacggggatgag 38006835  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 35583873 - 35583925
Alignment:
Q  185 tatttttcagcatcgaacacaatgttgtaatgcattatccaataaagatatga 237  Q
    |||||||||||  ||| | ||||||||||||||||||||||| ||||| ||||    
T  35583873 tatttttcagccacgagcgcaatgttgtaatgcattatccaacaaagagatga 35583925  T

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