View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_4 (Length: 665)
Name: NF21585_low_4
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 600; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 19 - 647
Target Start/End: Original strand, 29369700 - 29370330
Alignment:
| Q |
19 |
gttcaatgatatattcgtttattaatatacaaatctgtttaatatcattcttgcttcatttatcctgtaaga--tgccactcgattctttcctctcatcc |
116 |
Q |
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| T |
29369700 |
gttcaatgatatattcgtttattaatatacaaatctgtttaatatcattcttgcttcatttatcctgtaagagatgccactcgattctttcctctcatcc |
29369799 |
T |
|
| Q |
117 |
aaatttgatactgatgaattgtcagagcaatgatgtcattaactagtggggttcacatgtaaaccaatttaaaattgtcaagtttattagatgttgtatt |
216 |
Q |
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| T |
29369800 |
aaatttgatactgatgaattgtcagagcaatgatgtcattaactagtggggttcacatctaaaccaatttaaaattgtcaagtttattagatgttgtatt |
29369899 |
T |
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| Q |
217 |
agtggtaggttgtgtacacgttcatctagcccaactttagaaatgaaatggaaggaatatgctttaagtgttgagttggagaaagcgcataaatgtgaaa |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29369900 |
agtggtaggttgtgtacacgttcatctatcccaactttagaaatgaaatggaaggaatatgctttaagtgttgagttggagaaagcacataaatgtgaaa |
29369999 |
T |
|
| Q |
317 |
ctcacattcaaccacaaactatttatgtaataacaacaacaaaatagagtatgtgatgagatgtttacctgaattagctgaaggaccacaaagtgctaga |
416 |
Q |
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| T |
29370000 |
ctcacattcaaccacaaactatttatgtaataacagcaacaaaatagagtatgtgatgagatgtttacctgaattagctgaaggaccacaaagtgctaga |
29370099 |
T |
|
| Q |
417 |
tatccacttaaaaaacagaatttaatagatttgtcatatttgatatggtactggttaaatctgaagattgtctctactttgaggaagtctatacttatac |
516 |
Q |
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| T |
29370100 |
tatccacttaaaaaacagaatttaatagatttgtcatatttgatatggtactggttaaatctgaagattgtctctactttgaggaagtctatacttatac |
29370199 |
T |
|
| Q |
517 |
tggtgaaaatgactgttcacaggaaacgttttcttgtcaaattaaccatttacaaatggagcaactagctaacttacattaaattactaatacagagtgg |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29370200 |
cggtgaaaatgactgttcacaggaaacgttttcttgtcaaattaaccatttacaaatggagcaactagctaacttacattaaattactaatacagagtgg |
29370299 |
T |
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| Q |
617 |
gtaaagtgagtatacatttcaattaggacct |
647 |
Q |
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| T |
29370300 |
gtaaagtgagtatacatttcaattaggacct |
29370330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 29516166 - 29516256
Alignment:
| Q |
23 |
aatgatatattcgtttattaatat-acaaatctgtttaatatcattcttgcttcatttatcctgtaagatgccactcgattctttcctctc |
112 |
Q |
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| T |
29516166 |
aatgatatattcatttattaatattacaaatctatttaatatcattcttgcctaatttatcttgtaacattccacttgattctttcttctc |
29516256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 29516414 - 29516483
Alignment:
| Q |
205 |
agatgttgtattagtggtaggttgtgt-acacgttcatctagcccaactttagaaatgaaatggaaggaa |
273 |
Q |
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|||||||||||||||||||||| |||| |||| |||| ||| |||||||||||| || |||||||||||| |
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| T |
29516414 |
agatgttgtattagtggtaggtggtgtaacaccttcacctatcccaactttagatataaaatggaaggaa |
29516483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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