View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_40 (Length: 250)
Name: NF21585_low_40
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_40 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 29086287 - 29086136
Alignment:
| Q |
17 |
aagatagagtcacacatcaagtcaagcggtagtttttcctccattatctttttcattcttagagtgcttgatgtgaagaatagtgttagatttgtagcta |
116 |
Q |
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| T |
29086287 |
aagatagagtcacacatgacgtcaagcggtagtttttcctccattatctttttcattcttagagtgcttgatgtgaagaatagtgttagatttgtagcta |
29086188 |
T |
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| Q |
117 |
ttttacaaagtatatatatggcgtgtgtagtgcttgtttatggtagcaaaaa |
168 |
Q |
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| T |
29086187 |
ttttacgaagtatatatatggcgtgtgtagtgcttgtttatggtagcaaaaa |
29086136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 29085737 - 29085666
Alignment:
| Q |
179 |
tatgggaagtttactctctaattgtaagactttgtttttcatctaatgttagttacactctagcttatatta |
250 |
Q |
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| T |
29085737 |
tatgggaagtttactctctaattgtaagactttgtttttcatctaatgttagttacgttctagcttatatta |
29085666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 26893545 - 26893478
Alignment:
| Q |
183 |
ggaagtttactctctaattgtaagactttgtttttcatctaatgttagttacactctagcttatatta |
250 |
Q |
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| T |
26893545 |
ggaagtttactctctaattgcaggactttgctttttatctaatgctagttgtgctctagcttatatta |
26893478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 39249742 - 39249847
Alignment:
| Q |
16 |
caagatagagtcacacatcaagtcaagcggtagtttttcctccattatctttttcattcttagagtgcttgatgtgaagaatagtgttagatttgtagct |
115 |
Q |
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| T |
39249742 |
caagatagagttgtacatgatgttaagcggtagtttttcatatattatctttgtcattcttagagcgcttgaagtggacaatcatgctagatttgtcgct |
39249841 |
T |
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| Q |
116 |
atttta |
121 |
Q |
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|||||| |
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| T |
39249842 |
atttta |
39249847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 44758948 - 44759012
Alignment:
| Q |
185 |
aagtttactctctaattgtaagactttgtttttcatctaatgttagttacactctagcttatatta |
250 |
Q |
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| T |
44758948 |
aagtttactctctaattgtaggactttgctttt-atctaatactagttatgctctagcttatatta |
44759012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 2902325 - 2902409
Alignment:
| Q |
37 |
gtcaagcggtagtttttcctccattatctttttcattcttagagtgcttgatgtgaagaatagtgttagatttgtagctatttta |
121 |
Q |
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| T |
2902325 |
gtcaagcggtagtttttcgtctattatgttttccattcttagtgcgcttgaagtggacactcgtgctagattcgtcgctatttta |
2902409 |
T |
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