View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_42 (Length: 246)
Name: NF21585_low_42
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45725039 - 45725265
Alignment:
| Q |
1 |
tggtcccctaataatgcgtctctatttcatccacggcggccaacgtgtctggctctccgcctgcctggaaactgccggtttccccttgatgctcattccc |
100 |
Q |
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| T |
45725039 |
tggtcccctaataatgcgtctctatttcatccacggcggccaacgtgtctggctctccgcctgcctggaaactgccggtttccccttgatgctcattccc |
45725138 |
T |
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| Q |
101 |
ctcacaatctcatacatccaacgtttccgtcaccgccacaaacctttaccatccaacaccatctccatcgcctcagaaaaacaaagtataatctccatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45725139 |
ctcacaatctcatacatccaacgtttccgtcaccgccacaaacctttaccatccaacaccatctccatcgcctcagaaaaacaaaatataatctccatga |
45725238 |
T |
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| Q |
201 |
aaccacctattttcttcgcagccgcct |
227 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
45725239 |
aaccacctattttctttgcagccgcct |
45725265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 45729231 - 45729454
Alignment:
| Q |
4 |
tcccctaataatgcgtctctatttcatccacggcggccaacgtgtctggctctccgcctgcctggaaactgccggtttccccttgatgctcattcccctc |
103 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| |
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| T |
45729231 |
tcccctcataatgcgtctctatttcatccacggcggccaacgtgtctggctctccgccttcctccaaaccgccggtttccccttgatgctcattcccctc |
45729330 |
T |
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| Q |
104 |
acaatctcatacatccaacgtttccgtcaccgccacaaacctttaccatccaacaccatctccatcgcctcagaaaaacaaagtataatctccatgaaac |
203 |
Q |
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|||||||||||||| |||| ||||| || |||| | ||| ||||| | ||||||||||||||| ||||||||| || ||||||||||||||||| |
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| T |
45729331 |
gcaatctcatacatcaaacgccaccgtctccaccaccatcctccaccattgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaac |
45729430 |
T |
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| Q |
204 |
cacctattttcttcgcagccgcct |
227 |
Q |
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| ||||||||||||||||| |||| |
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| T |
45729431 |
ctcctattttcttcgcagctgcct |
45729454 |
T |
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