View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21585_low_43 (Length: 242)
Name: NF21585_low_43
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 47783226 - 47783452
Alignment:
| Q |
1 |
aagtgactatctcaggagttgagaacctatagacggacactactctcatgaagtgcacacaaagagccaaatgttcattacttttttacaagaagggtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47783226 |
aagtgactatctcaggagttgagaacctatagacggacactactctcatgaagtgcacacaaagagccaaatgttcattacttttttacaagaagggtca |
47783325 |
T |
|
| Q |
101 |
aatattttttatcagaaaaagaagggccaaatattcatactacttagatttatatgcatggttttgcgtatatcaaattggattaaggctaatgcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
47783326 |
aatattttttatcagaaaaagaagggccaaatattcatactacttagatttatatgcatggttttgcgta-------------taaggctaatgattcaa |
47783412 |
T |
|
| Q |
201 |
tgttccaccttttaaccaggtggtgtgcaaaattattcat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47783413 |
tgttccaccttttaaccaggtggtgtgcaaaattattcat |
47783452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 233
Target Start/End: Complemental strand, 8370045 - 8369875
Alignment:
| Q |
52 |
agtgcacacaaagagccaaatgttcattacttttttacaagaagggtcaaatattttttatcagaaaaagaagggccaaatattcatactacttagattt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
8370045 |
agtgcacacaaagagccaaatgttcattact-ttttacaagaagggtcaaatattttctacca-aaaaagaagggccaaatattcatttgacttagatt- |
8369949 |
T |
|
| Q |
152 |
atatgcatggttttgcgtatatcaaattggattaaggctaatgcttcaatgttccaccttt-taaccaggtggtgtgcaaaat |
233 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||| |||||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
8369948 |
---tgcatggttttgtgcgtatcaaattggat------taatgtttcaatgttctacctttctaactaggtggtgtgcaaaat |
8369875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University