View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21585_low_44 (Length: 241)
Name: NF21585_low_44
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 51116331 - 51116197
Alignment:
| Q |
18 |
acgaggatcatgacacaaattggctacggttcaatcaccaaatcaaagatcaatatgtcaagtccgtggtggatgatggtaaacctataacagtgcattt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51116331 |
acgaggatcatgacacaaattggctaccgttcaatcaccaaatcaaagatcaatatgtcaagtccgtggtggatgatggtaaacctataacagtgcattt |
51116232 |
T |
|
| Q |
118 |
tcgttaaacttgg-ttaggttgcttactttcgcta |
151 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51116231 |
tcgttaaacttggtttaggttgcttactttcgcta |
51116197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University