View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_49 (Length: 220)
Name: NF21585_low_49
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 43055128 - 43054938
Alignment:
| Q |
13 |
acacagacaacacactatactacaacatggtgctcaacttcacatcccacaacccaaacaaaaaacttggcatctactacgacaaagttgaagctcaagc |
112 |
Q |
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| T |
43055128 |
acacaaacaacacactatactacaacatggtgctcaacttcacatcccacaacccaaacaaaaaacttggcatctactacgacaaagttgaagctcaagc |
43055029 |
T |
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| Q |
113 |
attctatgaagggtcgaggttttctaatgtagatgttatcacacacatgaactcatttcgtcaagacaagaagaatagcaatcccatgacc |
203 |
Q |
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| T |
43055028 |
attctatgaagggtcgaggttttctaatgtagatgttatcacacacatgaactcatttcgtcaagacaagaagaatagcaatcccatgacc |
43054938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 43062379 - 43062208
Alignment:
| Q |
13 |
acacagacaacacactatactacaacatggtgctcaacttcacatcccacaacccaaacaaaaaacttggcatctactacgacaaagttgaagctcaagc |
112 |
Q |
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| T |
43062379 |
acacaaacaacacactacactacgacatggtgctcaatttcacagcacacaacccaaacaaaaaacttagcatctattacgataaagttgaagctcgagc |
43062280 |
T |
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| Q |
113 |
attctatgaagggtcgaggttttctaatgtagatgttatcacacacatgaactcatttcgtcaagacaagaa |
184 |
Q |
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| T |
43062279 |
tttctatgaaggatcgagatttgcaaatgtcgatgtgatcacacacatgaactcgtttcgccaaaacaagaa |
43062208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 43049588 - 43049406
Alignment:
| Q |
19 |
acaacacactatactacaacatggtgctcaacttcacatcccacaacccaaacaaaaaacttggcatctactacgacaaagttgaagctcaagcattcta |
118 |
Q |
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|||| |||||| |||||||||||||||||||||||||| | | || |||||||||||||| |||||| || || ||||| || || | ||||||||| |
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| T |
43049588 |
acaatacactaaactacaacatggtgctcaacttcacagcacgtaatccaaacaaaaaactcaacatctattatgataaagtggaggcacgagcattcta |
43049489 |
T |
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| Q |
119 |
tgaagggtcgaggttttctaatgtagatgttatcacacacatgaactcatttcgtcaagacaagaagaatagcaatcccatga |
201 |
Q |
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| T |
43049488 |
cgaagggtcaaggtttgccaatgttgatgtgatcacacacatgaactcatttcgccaatacaagaagagcagcaaccccatga |
43049406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 43024425 - 43024301
Alignment:
| Q |
31 |
actacaacatggtgctcaacttcacatcccacaacccaaacaaaaaacttggcatctactacgacaaagttgaagctcaagcattctatgaagggtcgag |
130 |
Q |
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||||||||||||||||||||||||| | | |||||||||||||||||| | |||| |||||||||||||| || | ||||||||| ||||| || || |
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| T |
43024425 |
actacaacatggtgctcaacttcaccgctcgcaacccaaacaaaaaactcaacttctattacgacaaagttgaggcacgagcattctacgaaggttcaag |
43024326 |
T |
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| Q |
131 |
gttttctaatgtagatgttatcaca |
155 |
Q |
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| T |
43024325 |
gttggcgaatgtggatgtgatcaca |
43024301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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