View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21585_low_55 (Length: 204)
Name: NF21585_low_55
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 48244862 - 48245039
Alignment:
| Q |
11 |
caaaggaaatcaaagttccctcacggatccctttttcagagttgtatctcacagcataataaggatttttaacttgtccaaagatctcatcaattaaacc |
110 |
Q |
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| T |
48244862 |
caaaggaaatcaaagttccctcacggatccctttttcagagttgtatctcacagcataataaggatttttaacttgtccaaagatctcatcaattaaacc |
48244961 |
T |
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| Q |
111 |
aagcaatgtttgcctttcagtaatccagagaatggaaccctcaataagaggtatcatctccattttccttgaccttat |
188 |
Q |
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| T |
48244962 |
aagcgatgtttgcctttcagtaatccagagaatggaaccctcaataagaggtatcatctccattttccttgaccttat |
48245039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 48241025 - 48241100
Alignment:
| Q |
11 |
caaaggaaatcaaagttccctcacggatccctt------------tttcagagttgtatctcacagcataataagg |
74 |
Q |
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| T |
48241025 |
caaaggaaatcaaagttccctcacggatcccttctggcacttctttttcagagttgtatctcacagcataataagg |
48241100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 48241102 - 48241134
Alignment:
| Q |
156 |
aagaggtatcatctccattttccttgaccttat |
188 |
Q |
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| T |
48241102 |
aagaggcatcatctccattttccttgaccttat |
48241134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 38172445 - 38172565
Alignment:
| Q |
41 |
ctttttcagagttgtatctcacagcataataaggatttttaacttgtccaaagatctcatcaattaaaccaagcaatgtttgcctttcagtaatccagag |
140 |
Q |
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| T |
38172445 |
ctttttcagaattgtatcgcacaacataataaggattttttacttgaccaaagacctcatcaattaagccaagaggtgtttgcctttcagtaatccaaag |
38172544 |
T |
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| Q |
141 |
aatggaaccctcaataagagg |
161 |
Q |
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| T |
38172545 |
aatggaaccctcattaagagg |
38172565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 46494248 - 46494276
Alignment:
| Q |
160 |
ggtatcatctccattttccttgaccttat |
188 |
Q |
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| T |
46494248 |
ggtatcatctccattttccttgaccttat |
46494276 |
T |
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