View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21586_high_3 (Length: 444)
Name: NF21586_high_3
Description: NF21586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21586_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 219 - 434
Target Start/End: Original strand, 946997 - 947212
Alignment:
| Q |
219 |
tcattcaaaatcaatcaaacgtatgttaatcgatattgtcgtcctaaatttttatttcatcctaaattattattttgacattgaatttagatagttacta |
318 |
Q |
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| T |
946997 |
tcattcaaaatcaatcaaacgtatgttaatcgatgttgtcgtcctaaatttttatttcatccttaattattattttgacattgaatttagatagttacta |
947096 |
T |
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| Q |
319 |
actttaattatgaatgtattaggcacaatgactcaattgcttggagttggtcaaagtgaatgctcacttatcatgtttgcaacttattcctctgctccac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
947097 |
actttaattatgaatgtattaggcacaatgactcaattgcttggagttggtcaaagtgaatgctcacttatcatgtttgcaacttattcctctgctccac |
947196 |
T |
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| Q |
419 |
ttttacttaccctttg |
434 |
Q |
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|||||||||||||||| |
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| T |
947197 |
ttttacttaccctttg |
947212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 946773 - 946982
Alignment:
| Q |
19 |
gttgttcctcctgcagtttccattagtaagttgtttatttatcaaacttcatgtatttatcaaattattactatgtagtgtgtgtgtatatatagtacta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
946773 |
gttgttcctcctgcagtttccattagtaagttgtttatttatcatacttcatgtatttatcaaattattactatgta----gtgtgtatatatagtacta |
946868 |
T |
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| Q |
119 |
aaaagctataattttaaaccaaacttttctaacacaaattcataaaatctcttttttatgaatgtatacaaacataaagcaatttatgtttaaatcactt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
946869 |
aaaagctataattttaaaccaaacttttctaacacaaattcataaaatctc-tttttatgaatgtatacaaacataaagcaatttacgtttaaatcactt |
946967 |
T |
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| Q |
219 |
tcattcaaaatcaat |
233 |
Q |
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|||||||||| |||| |
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| T |
946968 |
tcattcaaaaccaat |
946982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 46864324 - 46864380
Alignment:
| Q |
177 |
tgaatgtatacaaacataaagcaatttatgtttaaatcactttcattcaaaatcaat |
233 |
Q |
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|||| ||||||||||||||| || |||||||| |||||||||| | |||||||||| |
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| T |
46864324 |
tgaaggtatacaaacataaaccactttatgttaaaatcacttttaaccaaaatcaat |
46864380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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