View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21586_high_6 (Length: 334)

Name: NF21586_high_6
Description: NF21586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21586_high_6
NF21586_high_6
[»] chr2 (9 HSPs)
chr2 (10-289)||(31218974-31219254)
chr2 (10-321)||(31200347-31200661)
chr2 (10-334)||(31181306-31181636)
chr2 (10-148)||(31192342-31192480)
chr2 (169-288)||(31246451-31246570)
chr2 (18-108)||(31246283-31246373)
chr2 (183-278)||(31234624-31234719)
chr2 (24-117)||(31234449-31234542)
chr2 (211-259)||(31375455-31375503)
[»] chr8 (2 HSPs)
chr8 (21-95)||(20997725-20997799)
chr8 (21-95)||(21013564-21013638)
[»] chr5 (1 HSPs)
chr5 (20-94)||(36213407-36213481)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 31218974 - 31219254
Alignment:
Q  10 aagaaaatacatcatacttacaagtcagtgaggtttttcagatttaaaattccagaaggaattggaccactcaaaccactcccttgcatcaccctgtcaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31218974 aagaaaatacatcatacttacaagtcagtgaggtttttcagatttaaaattccagaaggaattggaccactcaaaccactcccttgcatcaccctgtcaa 31219073  T
Q  110 aattaaaagttattattttgacaaaccagcttaactaag-nnnnnnnttatgatttagagtttcacaagaagaaagaaaaggttcacacatcctctcaag 208  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31219074 aattaaaagttattattttgacaaaccagcttaactaagaaaaaaaattatgatttagaatttcacaagaagaaagaaaaggttcacacatcctctcaag 31219173  T
Q  209 aattgtccagctctgaatgaaatcaggtatagttccagaaaattgattgtcgcaaagtcgactgcattttcagaaggtaaa 289  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31219174 aattgtccagttctgaatgaaatgaggtatagttccagaaaattgattgtcgcaaagtcgactgcattttcagaaggtaaa 31219254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 31200347 - 31200661
Alignment:
Q  10 aagaaaatacatcatacttacaagtcagtgaggtttttcagatttaaaattccagaaggaattggaccactcaaaccactcccttgcatcaccctgtcaa 109  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200347 aagaaaatacatcatacttacaagccattgaggtttttcagatatgaaattccagaaggaattggaccactcaaaccactcccttgcatcaccctgtcaa 31200446  T
Q  110 aattaaaagttattattttgacaaaccagcttaactaagnnnnnnn-ttatgatttagagtttcacaagaagaaagaaaaggttcacacatcctctcaag 208  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  31200447 aattaaaagttattattttgacaaaccagcttaactaagaaaaaaaattatgatttagaatttcgcaagaagaaagaaaaggttcacacatcctctcaag 31200546  T
Q  209 aattgtccagctctgaatgaaatcaggtatagttccagaaaattgattgtcgcaaagtcgactgcattttcagaaggtaa--acaatgaatatgatatta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||    
T  31200547 aattgtccagctctgaatgaaatcaggtatagttccagaaaattgattgtcacaaagtcgactgcattttcagaaggtaaacacaatgaataagatatta 31200646  T
Q  307 cggttgatatgaaca 321  Q
    ||||| |||||||||    
T  31200647 cggttcatatgaaca 31200661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 31181306 - 31181636
Alignment:
Q  10 aagaaaatacatcatacttacaagtcagtgaggtttttcagatttaaaattccagaaggaattggaccactcaaaccactcccttgcatcaccctgtcaa 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31181306 aagaaaatacatcatacttacaagtcattgaggtttttcagatatgaaattccagaaggaattggaccactcaacccactcccttgcatcaccctgtcaa 31181405  T
Q  110 aattaaaagttattattttgacaaaccagcttaactaagnnnnnnn-ttatgatttagagtttcacaagaagaaagaaaa-ggttcacacatcctctcaa 207  Q
    | |||||||  ||| |||  |||||||||||||||||||        |||||||||||| |||||| |||||||| |||| ||||||||||| |||||||    
T  31181406 a-ttaaaagcaattctttcaacaaaccagcttaactaagaaaaaaaattatgatttagaatttcacgagaagaaacaaaaaggttcacacattctctcaa 31181504  T
Q  208 gaattgtccagctctgaatgaaatcaggtatagttccagaaaattgattgtcgcaaagtcgactgcattttcagaaggtaa--acaatgaatatgatatt 305  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||| ||||||    
T  31181505 gaattgtccagctctgaatgaaataaggtatagttccagaaaattgattgtcacaaagtcgactgcattttcagaaggtaaacacaatgaataagatatt 31181604  T
Q  306 acggttgatatgaa---caatagaatgaatgt 334  Q
    |||||| |||||||   |||||||||||||||    
T  31181605 acggttcatatgaacatcaatagaatgaatgt 31181636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 31192342 - 31192480
Alignment:
Q  10 aagaaaatacatcatacttacaagtcagtgaggtttttcagatttaaaattccagaaggaattggaccactcaaaccactcccttgcatcaccctgtcaa 109  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31192342 aagaaaatacatcatacttacaagccattgaggtttttcagatatgaaattccagaaggaattggaccactcaaaccactcccttgcatcaccctgtcaa 31192441  T
Q  110 aattaaaagttattattttgacaaaccagcttaactaag 148  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31192442 aattaaaagttattattttgacaaaccagcttaactaag 31192480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 31246451 - 31246570
Alignment:
Q  169 tttcacaagaagaaagaaaaggttcacacatcctctcaagaattgtccagctctgaatgaaatcaggtatagttccagaaaattgattgtcgcaaagtcg 268  Q
    |||||||| |||||| |||| ||||| ||| |||||||||| ||  |||||| |||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  31246451 tttcacaacaagaaataaaaagttcatacagcctctcaagactttcccagctttgaatgaaatcaggtaaagttccagagaattgattgtcgccaagtcg 31246550  T
Q  269 actgcattttcagaaggtaa 288  Q
    |||||||||| ||| |||||    
T  31246551 actgcatttttagacggtaa 31246570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 31246283 - 31246373
Alignment:
Q  18 acatcatacttacaagtcagtgaggtttttcagatttaaaattccagaaggaattggaccactcaaaccactcccttgcatcaccctgtca 108  Q
    ||||| |||||||||||| ||||||||||| |||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  31246283 acatcttacttacaagtcggtgaggttttttagatatgaaattccagaaggaattggtccactcaaaccactcccttgcataaccctgtca 31246373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 31234624 - 31234719
Alignment:
Q  183 agaaaaggttcacacatcctctcaagaattgtccagctctgaatgaaatcaggtatagttccagaaaattgattgtcgcaaagtcgactgcatttt 278  Q
    |||||||||||| ||| ||| |||||| ||| |||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  31234624 agaaaaggttcatacagcctttcaagacttgcccagttctgaatcaaatcaggtatagttccagagaattgattgtcgccaagtcgactgcatttt 31234719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 31234449 - 31234542
Alignment:
Q  24 tacttacaagtcagtgaggtttttcagatttaaaattccagaaggaattggaccactcaaaccactcccttgcatcaccctgtcaaaattaaaa 117  Q
    ||||||||| || ||||||||||| |||| | ||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||    
T  31234449 tacttacaaatcggtgaggttttttagatatgaaattcccgaaggaactgggccactcaaaccactcccttgcataaccctgtcacaattaaaa 31234542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 31375455 - 31375503
Alignment:
Q  211 ttgtccagctctgaatgaaatcaggtatagttccagaaaattgattgtc 259  Q
    |||||||| ||||||| |||||||||||  ||||||| |||||||||||    
T  31375455 ttgtccagttctgaataaaatcaggtatctttccagagaattgattgtc 31375503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 20997799 - 20997725
Alignment:
Q  21 tcatacttacaagtcagtgaggtttttcagatttaaaattccagaaggaattggaccactcaaaccactcccttg 95  Q
    |||||||||||||||||||||||| |||| |  | ||||||||||||||||||| ||||||||||||||||||||    
T  20997799 tcatacttacaagtcagtgaggttcttcaaaagtgaaattccagaaggaattggcccactcaaaccactcccttg 20997725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 21013564 - 21013638
Alignment:
Q  21 tcatacttacaagtcagtgaggtttttcagatttaaaattccagaaggaattggaccactcaaaccactcccttg 95  Q
    |||||||||||||||||||||||| |||| |  | ||||||||||||||||||| ||||||||||||||||||||    
T  21013564 tcatacttacaagtcagtgaggttcttcaaaagtgaaattccagaaggaattggcccactcaaaccactcccttg 21013638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 36213407 - 36213481
Alignment:
Q  20 atcatacttacaagtcagtgaggtttttcagatttaaaattccagaaggaattggaccactcaaaccactccctt 94  Q
    ||||||| ||||||||||| |  |||| ||  ||| ||||||||||||||||||| ||||| || ||||||||||    
T  36213407 atcatacatacaagtcagttaatttttccaattttgaaattccagaaggaattggcccacttaatccactccctt 36213481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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