View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21586_low_1 (Length: 612)

Name: NF21586_low_1
Description: NF21586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21586_low_1
NF21586_low_1
[»] chr7 (3 HSPs)
chr7 (1-470)||(48224238-48224708)
chr7 (505-585)||(48224754-48224837)
chr7 (483-545)||(48551903-48551965)
[»] chr2 (2 HSPs)
chr2 (483-545)||(2784975-2785037)
chr2 (483-548)||(34346288-34346353)
[»] chr8 (2 HSPs)
chr8 (486-548)||(11785959-11786021)
chr8 (483-545)||(8997545-8997607)
[»] scaffold0002 (1 HSPs)
scaffold0002 (483-548)||(613-678)
[»] chr5 (5 HSPs)
chr5 (483-545)||(2485240-2485302)
chr5 (483-545)||(5731921-5731983)
chr5 (483-545)||(21375395-21375457)
chr5 (483-545)||(27648426-27648488)
chr5 (483-545)||(40773317-40773379)
[»] chr4 (2 HSPs)
chr4 (483-545)||(36145216-36145278)
chr4 (483-539)||(25406564-25406620)
[»] chr3 (3 HSPs)
chr3 (481-545)||(8362620-8362684)
chr3 (481-545)||(35923623-35923687)
chr3 (483-539)||(53649776-53649832)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 48224238 - 48224708
Alignment:
Q  1 ttatatttgttgacatgttttaaagaaaataattatatttagagataatttttgtaaccatattattcgtgcataatattcactaattttattgttgacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48224238 ttatatttgttgacatgttttaaagaaaataattatatttagagataatttttgtaaccatattattcgtgcataatattcactaattctattgttgacc 48224337  T
Q  101 aatctctatcaagcaatatgacatatcacttttaatgaggtctct--------gaggtagttggaggattatcttttgttatatttttctttcctctttc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| | |||||||||||||||||||    
T  48224338 aatctctatcaagcaatatgacatatcacttttaatgaggtctctcctcctctgaggtagttggaggattatcttttgatctatttttctttcctctttc 48224437  T
Q  193 tttttacccaaaatcatnnnnnnnnnnnnnnnnnnnnnntcacaaacatttggatctaatcaacacatttaaattgacctattggcatggtttacgataa 292  Q
    |||||||||||||||||                      |||||||||||||||||||||||       |||||| |||||||||||| |||||||||||    
T  48224438 tttttacccaaaatcataaagaaaagaaaagaaaaaaaatcacaaacatttggatctaatca-------taaatttacctattggcatagtttacgataa 48224530  T
Q  293 acaaaatgaaattcgatgttggtaatccaattatctaagtcagtatacatcaaatttttatattttttgactcgagggggtagtgcatgtcaagaagcag 392  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48224531 acaaaatgaaaatcgatgttggtaatccaattatctaagtcagtatacatcaaatttttatattttttgactcgagggggtagtgcatgtcaagaagcag 48224630  T
Q  393 ggttgaaaatttggttgcgaaattgcatttgctacagctgaatataacggttccaaaaataaaatggtaaaatctcaa 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48224631 ggttgaaaatttggttgcgaaattgcatttgctacagctgaatataacggttccaaaaataaaatggtaaaatctcaa 48224708  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 505 - 585
Target Start/End: Original strand, 48224754 - 48224837
Alignment:
Q  505 caaagatgaaggactaatttgactcatacgtagaggcatgcaca---accaagcgttgttcctatgaaaattgaacccgatatt 585  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||   | ||||||||||||| ||| ||||||||| |||||||    
T  48224754 caaagatgaaggactaatttgactcatacgtagatacatgcgcactgatcaagcgttgttcccatggaaattgaactcgatatt 48224837  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 545
Target Start/End: Complemental strand, 48551965 - 48551903
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    |||||||||||||||||| |||||||| || | |||||||  | |||||||||||||||||||    
T  48551965 ttcgcaccggtttccgatccatcaaaggtggacgactaatccggctcatacgtagaggcatgc 48551903  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 483 - 545
Target Start/End: Complemental strand, 2785037 - 2784975
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    ||||||||||||||||| ||||||| |||| | ||||||| |||||||| |||||||||||||    
T  2785037 ttcgcaccggtttccgactcatcaatgatggacgactaatctgactcatgcgtagaggcatgc 2784975  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 548
Target Start/End: Original strand, 34346288 - 34346353
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgcaca 548  Q
    |||||||||||||||||  || ||||| |||  || |||| |||||||| ||||||||||||||||    
T  34346288 ttcgcaccggtttccgacccaccaaaggtgagcgattaatctgactcatgcgtagaggcatgcaca 34346353  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 548
Target Start/End: Complemental strand, 11786021 - 11785959
Alignment:
Q  486 gcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgcaca 548  Q
    ||||||||||||||| ||||||||||||  || |||| || ||||| ||||||||||||||||    
T  11786021 gcaccggtttccgatccatcaaagatgagcgattaatctggctcatgcgtagaggcatgcaca 11785959  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Original strand, 8997545 - 8997607
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    |||||||||||||||||  || |||||||||| ||||||| || ||||| |||| ||||||||    
T  8997545 ttcgcaccggtttccgacccaccaaagatgaacgactaatctggctcatgcgtataggcatgc 8997607  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 483 - 548
Target Start/End: Complemental strand, 678 - 613
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgcaca 548  Q
    |||||||||||||||||  || ||||| |||  ||||||| || ||||||||||||||||||||||    
T  678 ttcgcaccggtttccgacccaccaaaggtgagcgactaatctggctcatacgtagaggcatgcaca 613  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Complemental strand, 2485302 - 2485240
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    |||||| ||||||||||  |||||||| |||  |||||||  |||||||||||||||||||||    
T  2485302 ttcgcatcggtttccgacccatcaaaggtgagcgactaatccgactcatacgtagaggcatgc 2485240  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Original strand, 5731921 - 5731983
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    |||||||||||||||||  ||  |||| |||| ||||||| || |||||||||||||||||||    
T  5731921 ttcgcaccggtttccgacccactaaaggtgaacgactaatctggctcatacgtagaggcatgc 5731983  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Complemental strand, 21375457 - 21375395
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    ||||||| |||||||||| ||||||||||| | |||||||  ||||||| |||||| ||||||    
T  21375457 ttcgcactggtttccgatccatcaaagatggacgactaatccgactcatgcgtagaagcatgc 21375395  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Original strand, 27648426 - 27648488
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    |||||| ||||||||||| || |||||||| | |||||||  | |||||||||||||||||||    
T  27648426 ttcgcatcggtttccgatccaccaaagatggacgactaatccggctcatacgtagaggcatgc 27648488  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Complemental strand, 40773379 - 40773317
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    |||||||||||||||||  || |||||||||| |||||||  ||||| || ||||||||||||    
T  40773379 ttcgcaccggtttccgacgcaccaaagatgaacgactaatccgactcgtatgtagaggcatgc 40773317  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 545
Target Start/End: Original strand, 36145216 - 36145278
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    ||||||||||||||||||||||||||| || | |||||||  | |||||  ||||||||||||    
T  36145216 ttcgcaccggtttccgattcatcaaaggtggacgactaatccggctcatgtgtagaggcatgc 36145278  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 25406564 - 25406620
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagag 539  Q
    |||||||||||||||||  |||||||| |||| ||||||| ||| |||| |||||||    
T  25406564 ttcgcaccggtttccgacccatcaaaggtgaacgactaatctgattcatgcgtagag 25406620  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 545
Target Start/End: Complemental strand, 8362684 - 8362620
Alignment:
Q  481 cattcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    |||||||||||||||| ||| ||  |||| || | |||||||||| ||||| |||||||||||||    
T  8362684 cattcgcaccggtttcggatccactaaaggtggacgactaatttggctcatgcgtagaggcatgc 8362620  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 545
Target Start/End: Original strand, 35923623 - 35923687
Alignment:
Q  481 cattcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagaggcatgc 545  Q
    |||| |||||||||| |||| ||||||||||| | |||||||| ||||| | | |||||||||||    
T  35923623 catttgcaccggttttcgatccatcaaagatggacgactaattcgactcgtgcttagaggcatgc 35923687  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 53649832 - 53649776
Alignment:
Q  483 ttcgcaccggtttccgattcatcaaagatgaaggactaatttgactcatacgtagag 539  Q
    |||||||||||||||||| |||||||| |||| |||||||  | ||||| |||||||    
T  53649832 ttcgcaccggtttccgatccatcaaaggtgaacgactaatccggctcatgcgtagag 53649776  T

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