View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21586_low_12 (Length: 219)
Name: NF21586_low_12
Description: NF21586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21586_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 42339800 - 42339662
Alignment:
| Q |
66 |
ggatgctatcagcaaaacagtagtacgacagcaaaaagaggaaaatataccatcgcttcctataaggctgttgaatagacctctatcaccgcttcttctt |
165 |
Q |
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| T |
42339800 |
ggatgctatcagcaaaacagtagtacgacag-aaaaagaggaaaatataccatcgcttcctataaggctattgaatcgacctctatcactgcttcttctt |
42339702 |
T |
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| Q |
166 |
ccaccgctccatccaccaccaccactctttccacctccac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42339701 |
ccaccgctccatccaccaccaccactctttccacctccac |
42339662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 42339597 - 42339554
Alignment:
| Q |
66 |
ggatgctatcagcaaaacagtagtacgacagcaaaaagaggaaa |
109 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
42339597 |
ggatgttatcagcaaaacagtagtacgacaacaaaaagaggaaa |
42339554 |
T |
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