View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21586_low_2 (Length: 494)
Name: NF21586_low_2
Description: NF21586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21586_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 12 - 494
Target Start/End: Original strand, 25253850 - 25254341
Alignment:
| Q |
12 |
atcaggtatgatagtttgaacaatagaatcagaagaatggacaagaagataatcaacctaaaagggcgactaaggttttaggtgaaagaacgaagaggta |
111 |
Q |
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| T |
25253850 |
atcaggtatgatagtttgaacaatagaatcagaagaatggacaagaagataatcaacctaaaagggagactaaggttttaggtgaaagaacgaagaggta |
25253949 |
T |
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| Q |
112 |
ataatatcaatttt--gttgt---ttcaagattttattgaaacaaatgccttagactgtaaaaactaaaatcatcagccagaaaatacataaaagaacaa |
206 |
Q |
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| T |
25253950 |
ataatatcaattttctgttgtaatttcaagagtttattgaaacaaatgccttagactgtaaaaactaaaatcatcagccagaaaatacataaaagaacaa |
25254049 |
T |
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| Q |
207 |
cgaaatagtttcaagttgtggttccaaccaaaagtatttttgcttatgcataggtaaagttaactttatcatagaatgaaattcatagacagcaatgtaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25254050 |
cgaaatagtttcaagttgtggttccaaccaaaagtacttttgcttatgcataggtaaagttaactttatcatagaatgaaattcatagacagcaatgtaa |
25254149 |
T |
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| Q |
307 |
gacataaaaagaagaaaaaatatatataagaacgaatctaacttcgtcaacaccaaacagcatacttagcaaacaatcc----nnnnnnnnggcttactt |
402 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
25254150 |
gacataaaaagaagaaaaagtatatataagaacgaatctaacttcgtccacaccaaacagcatacttagcaaacaatccaaaaaaaaaaaaggcttactt |
25254249 |
T |
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| Q |
403 |
gattatagtatgttggcatccatgtaagaagaatgaaagttccccagttgtggcaaaagtgggacacaatcagggcccagactggtggtttc |
494 |
Q |
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| T |
25254250 |
gattatagtatgttggcatccatgtaagaagaatgaaagttccccagttgtggcaaaagtgggacacaatcagggcccagaccggtggtttc |
25254341 |
T |
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