View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21586_low_4 (Length: 429)
Name: NF21586_low_4
Description: NF21586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21586_low_4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 24 - 429
Target Start/End: Complemental strand, 42339660 - 42339254
Alignment:
| Q |
24 |
tctaccactagaaccttgacaaacctacaaacaaaagaaaattttaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaa |
123 |
Q |
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| T |
42339660 |
tctaccactagaaccttgacaaacctacaaacaaaagaaagtttcaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaa |
42339561 |
T |
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| Q |
124 |
gaggaaagactgttgaatcgacctctaccaccgcttcctcttccactgctcgatctaccaccatcaaagcatttcgatatagattgagccataagtaacg |
223 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
42339560 |
gaggaaagactgttgaatcgacctctaccaccacttcctcttccactgctcgttctaccaccatcaaagcatttcaaattagattgagccataagtaacg |
42339461 |
T |
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| Q |
224 |
tctcttgttggtctttcaagcatttcttttctattaggacctcacgttggtagtaggctatacgaccgttgtacattgcaattgtcctatcgatgttctc |
323 |
Q |
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| T |
42339460 |
tctcttgttggtcttccaagcatttcttttctattaggacctcacgttggtagtaggttatacgactgttgtacattgcaattgtcctatcgatgttctc |
42339361 |
T |
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| Q |
324 |
tatttcttctttgatttccagtatttc-nnnnnnnnnnnnnnnnncgccatatttatcgcaccaccgcacctgggtcatcataataaactttataagggg |
422 |
Q |
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| T |
42339360 |
tatttcttctttgatttccagtatttcttcttctatgattttttttgccatatttatcgcaccaccgcacctaggtcatcataataaactttataagggg |
42339261 |
T |
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| Q |
423 |
actaaat |
429 |
Q |
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| T |
42339260 |
actaaat |
42339254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 42339831 - 42339758
Alignment:
| Q |
56 |
aaaagaaaattttaacataaaaagacaaataggatgttatcagcaaaacagtagtacgacaacaaaaagaggaaa |
130 |
Q |
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| T |
42339831 |
aaaagaaaatttcaacataaaaaaacaaataggatgctatcagcaaaacagtagtacgac-agaaaaagaggaaa |
42339758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 42339875 - 42339836
Alignment:
| Q |
27 |
accactagaaccttgacaaacctacaaacaaaagaaaatt |
66 |
Q |
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| T |
42339875 |
accaccagaaccttgacaaaccgacaaacaaaagaaaatt |
42339836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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