View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21587_high_11 (Length: 306)
Name: NF21587_high_11
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21587_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 27523652 - 27523917
Alignment:
| Q |
21 |
gaaagaggtgtgcagattattcttgtttggattgctaatttccttcttttttacgggatgttattccttaattcattcaaatatttgtttatgttgaaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27523652 |
gaaagaggtgtgcagattattcttgtttggattgctaatttccttcttttttacgggatgttattccttaattctttcaaatatttgtttatgttgaaaa |
27523751 |
T |
|
| Q |
121 |
ttctaccttcaatcgtggcttcctaattgcggcatttggattgttcagaatctctatttctctattatttctacctcctgtcatggtgaaaagaacttgg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27523752 |
ttctaccttcaatcgtggcttcctaattgcggcatttggattgttcagaatctctatttctctattatttctacctcctgtcatggtgaaaagaacttgg |
27523851 |
T |
|
| Q |
221 |
tgatgacaacttataatttgtaggcataaaaataatgaatttcaattgcaaatgttggtaaataaa |
286 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27523852 |
tgataacaacttataatttgtaggcataaaaataatgaatttcaattgcaaatgttggtaaataaa |
27523917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 12858268 - 12858395
Alignment:
| Q |
43 |
ttgtttggattgctaatttccttcttttttacgggatgttattccttaattcattcaaatatttgtttatgttgaaaattctaccttcaatcgtggcttc |
142 |
Q |
| |
|
||||||| ||||||||||||| |||||| || |||||||||| |||||||| |||||||||||||||||||||||||||||||| || || ||||| || |
|
|
| T |
12858268 |
ttgtttgaattgctaatttccatcttttata--ggatgttatttcttaattctttcaaatatttgtttatgttgaaaattctaccatc-attgtggcctc |
12858364 |
T |
|
| Q |
143 |
ctaattgcggcatttggattgttcagaatct |
173 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
|
|
| T |
12858365 |
ctaattgcgacatttggattgttcagaatct |
12858395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University