View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21587_high_16 (Length: 232)

Name: NF21587_high_16
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21587_high_16
NF21587_high_16
[»] chr2 (7 HSPs)
chr2 (99-213)||(14949574-14949683)
chr2 (1-74)||(12701951-12702025)
chr2 (2-74)||(12702196-12702269)
chr2 (1-74)||(12261093-12261167)
chr2 (2-100)||(21304326-21304425)
chr2 (1-74)||(2217876-2217950)
chr2 (1-60)||(25945864-25945924)
[»] chr4 (13 HSPs)
chr4 (1-100)||(55620191-55620291)
chr4 (1-100)||(55627495-55627595)
chr4 (1-74)||(1113234-1113308)
chr4 (1-98)||(24039250-24039348)
chr4 (1-74)||(17254715-17254789)
chr4 (1-60)||(51399254-51399314)
chr4 (1-74)||(1113446-1113520)
chr4 (1-74)||(8607800-8607874)
chr4 (5-74)||(24039522-24039592)
chr4 (1-74)||(29430174-29430248)
chr4 (1-74)||(36215673-36215747)
chr4 (1-67)||(43099355-43099421)
chr4 (1-60)||(49905766-49905826)
[»] chr1 (23 HSPs)
chr1 (1-73)||(52285079-52285151)
chr1 (1-74)||(7714196-7714270)
chr1 (1-74)||(47422130-47422204)
chr1 (1-99)||(52285321-52285420)
chr1 (1-74)||(39277851-39277925)
chr1 (1-107)||(19920496-19920603)
chr1 (1-98)||(45823056-45823154)
chr1 (1-97)||(16959107-16959204)
chr1 (2-74)||(47421915-47421988)
chr1 (1-74)||(27334369-27334443)
chr1 (1-74)||(28990323-28990397)
chr1 (1-74)||(36077123-36077197)
chr1 (1-74)||(39277606-39277680)
chr1 (2-74)||(16958866-16958939)
chr1 (1-97)||(30050184-30050281)
chr1 (1-95)||(30049918-30050013)
chr1 (1-74)||(10394154-10394228)
chr1 (1-74)||(10394399-10394473)
chr1 (1-74)||(28990567-28990641)
chr1 (1-74)||(45822811-45822885)
chr1 (1-74)||(49186024-49186098)
chr1 (1-74)||(36076909-36076983)
chr1 (5-72)||(15158349-15158417)
[»] chr3 (12 HSPs)
chr3 (1-74)||(49220351-49220425)
chr3 (2-74)||(49220138-49220211)
chr3 (1-100)||(31071183-31071283)
chr3 (1-100)||(11047247-11047347)
chr3 (3-100)||(31070947-31071045)
chr3 (1-74)||(28253709-28253783)
chr3 (17-101)||(18734154-18734238)
chr3 (1-95)||(18733945-18734039)
chr3 (1-74)||(52857000-52857074)
chr3 (1-53)||(46453143-46453196)
chr3 (1-60)||(4953393-4953453)
chr3 (5-74)||(11046992-11047061)
[»] chr8 (12 HSPs)
chr8 (1-100)||(36194896-36194996)
chr8 (1-101)||(36194624-36194725)
chr8 (1-99)||(31933272-31933371)
chr8 (1-94)||(12654970-12655064)
chr8 (1-101)||(31933540-31933641)
chr8 (1-74)||(13557408-13557482)
chr8 (1-96)||(12654703-12654799)
chr8 (1-60)||(21015201-21015261)
chr8 (1-74)||(18847391-18847464)
chr8 (17-74)||(13557164-13557221)
chr8 (1-60)||(10134646-10134706)
chr8 (3-74)||(18847605-18847677)
[»] chr7 (13 HSPs)
chr7 (1-74)||(32871633-32871708)
chr7 (1-74)||(6000503-6000577)
chr7 (1-74)||(8462871-8462945)
chr7 (1-74)||(4133106-4133180)
chr7 (2-74)||(43392322-43392395)
chr7 (1-60)||(16962882-16962942)
chr7 (5-100)||(25731916-25732012)
chr7 (1-67)||(6000716-6000783)
chr7 (1-74)||(18417485-18417559)
chr7 (1-70)||(32389711-32389781)
chr7 (1-53)||(24846289-24846342)
chr7 (1-61)||(30284185-30284246)
chr7 (1-60)||(24485804-24485864)
[»] chr5 (7 HSPs)
chr5 (1-60)||(18508791-18508851)
chr5 (1-74)||(9989980-9990053)
chr5 (1-96)||(8417561-8417657)
chr5 (1-70)||(9990192-9990262)
chr5 (1-100)||(18968771-18968871)
chr5 (1-60)||(35463832-35463892)
chr5 (1-74)||(18968533-18968607)
[»] chr6 (1 HSPs)
chr6 (1-74)||(1211664-1211738)
[»] scaffold0220 (1 HSPs)
scaffold0220 (1-60)||(26001-26061)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 14949574 - 14949683
Alignment:
Q  99 tatctttttcttcagtccttggcatgctcttcacgacctctctctatccacatttttgttgatttcttcaatttgcatgtgatc-ttccccattaaatta 197  Q
    |||||||||||||||| |    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14949574 tatctttttcttcagtgc----catgctcttcacgacctct--ctatccacatttttgttgatttcttcaatttgcatgtgatctttccccattaaatta 14949667  T
Q  198 ggatcgggaggcttat 213  Q
    ||||||||||||||||    
T  14949668 ggatcgggaggcttat 14949683  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 12702025 - 12701951
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||| ||||||||| |||||||| ||| | |||||| ||||| |||||||||||||||| |||||||||||    
T  12702025 ctttaaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgaaatcaagtta 12701951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 12702196 - 12702269
Alignment:
Q  2 tttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    ||||||||||||||||| |||||||| ||| | |||||| ||||| |||||||||||||||| | |||||||||    
T  12702196 tttaaataaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgatatcaagtta 12702269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 12261093 - 12261167
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| | |||||| ||| | |||||  ||||| |||||||||||||||| |||||||||||    
T  12261093 ctttaaataaagttaagggagctaaacggaccttttattgcttatgtgaccaaaccgatacttgaaatcaagtta 12261167  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 21304425 - 21304326
Alignment:
Q  2 tttaaataaagttaag-gacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagccta 100  Q
    |||||||||||||||| || ||||||  || | |||||| ||||| ||||||||||||| || ||||||||||| |  |||||  || ||||||||||||    
T  21304425 tttaaataaagttaagcgatctaaacgaacattttattacttatgggaccaaaccgatatttgaaatcaagttaagggatcaattgagcatttaagccta 21304326  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2217876 - 2217950
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| || ||||| ||| | |||||| ||||| |||||||||  ||||| |||||||||||    
T  2217876 ctttaaataaagttaagggacataaacggacattttattacttatgggaccaaaccattacttgaaatcaagtta 2217950  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25945924 - 25945864
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    |||||||||||||||||| |||||||||||  | |||||| ||||| ||||||| ||||||    
T  25945924 ctttaaataaagttaagggacctaaacagatcttttattacttatgggaccaaagcgatac 25945864  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 55620291 - 55620191
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    |||| ||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||| |  | ||||||| |||||||||||    
T  55620291 cttttaataaagttaagggacctaaacagactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaaaagagcatttaagcct 55620192  T
Q  100 a 100  Q
    |    
T  55620191 a 55620191  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 55627595 - 55627495
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    |||| ||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||| |  | ||||||| |||||||||||    
T  55627595 cttttaataaagttaagggacctaaacagactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaaaagagcatttaagcct 55627496  T
Q  100 a 100  Q
    |    
T  55627495 a 55627495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 1113308 - 1113234
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||||||||| |||||| ||||| |||||| ||||||||| |||||||||||    
T  1113308 ctttaaataaagttaagggacctaaacagactttttattacttatgggaccaacccgatacttgaaatcaagtta 1113234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 24039348 - 24039250
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcc 98  Q
    ||||||||||| |||| ||||||||||  |||| |||||| ||||| |||||||||||||||| ||||||||||| |  |||||  |||||||||||||    
T  24039348 ctttaaataaaattaaaggacctaaacgaactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggatcaattgaacatttaagcc 24039250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17254715 - 17254789
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||| ||| | |||||| |||||||| |||||| |||||| |||||||||||    
T  17254715 ctttaaataaagttaagggacctaaacggacattttattacttatgagatcaaaccaatacttgaaatcaagtta 17254789  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 51399314 - 51399254
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    |||||||||||||||||| |||||||||||||| |||||| ||||| ||||||| ||||||    
T  51399314 ctttaaataaagttaagggacctaaacagactttttattacttatgggaccaaagcgatac 51399254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1113446 - 1113520
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||| ||||||||| |||||||||||| | ||| |||||||| ||||||| | |||||| |||||||||||    
T  1113446 ctttaaatgaagttaagggacctaaacagaccttttaatatttatgggaccaaatcaatacttgaaatcaagtta 1113520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8607874 - 8607800
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| || ||||| ||| | |||||| ||||| || ||||||||||||| |||||||||||    
T  8607874 ctttaaataaagttaagggacttaaacggaccttttattacttatgggatcaaaccgatacttgaaatcaagtta 8607800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 24039522 - 24039592
Alignment:
Q  5 aaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||| ||||||||  || | |||||| ||||||||||||||| |||||| |||||||||||    
T  24039522 aaataaagttaagggacctaaacgaaccttttattacttatgagaccaaaccaatacttgaaatcaagtta 24039592  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 29430174 - 29430248
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    ||||||||||| |||||| | ||||||| || | |||||| ||||| ||||||||| ||||||||||||||||||    
T  29430174 ctttaaataaaattaagggatctaaacataccttttattacttatgggaccaaaccaatacttaaaatcaagtta 29430248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 36215747 - 36215673
Alignment:
Q  1 ctttaaataaagttaaggac-ctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||||  |||||| ||| | |||||| ||||| |||||||||||||||| |||| ||||||    
T  36215747 ctttaaataaagttaaggaatctaaacggaccttttattacttatgggaccaaaccgatacttgaaattaagtta 36215673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43099421 - 43099355
Alignment:
Q  1 ctttaaataaagttaaggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaat 67  Q
    |||||||||||||||||||||||||| ||| | |||||| |||||  | |||||||||| |||||||    
T  43099421 ctttaaataaagttaaggacctaaacggaccttttattacttatggaatcaaaccgatatttaaaat 43099355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49905826 - 49905766
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    |||||||||||||||||| |||||||| ||| | |||||| ||||||||||||| ||||||    
T  49905826 ctttaaataaagttaagggacctaaacggaccttttattacttatgagaccaaagcgatac 49905766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 52285151 - 52285079
Alignment:
Q  1 ctttaaataaagttaaggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtt 73  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||| |||||    
T  52285151 ctttaaataaagttaaggacctaaacggactttttattacttatgagaccaaaccaatacttaaaattaagtt 52285079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7714270 - 7714196
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| ||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  7714270 ctttaaataaagttaagggacctagacagactttttattacttatgggaccaaaccgatacttaaaatcaagtta 7714196  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 47422130 - 47422204
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||    
T  47422130 ctttaaataaagttaagggacctaaacagacctcttattacttatgggaccaaaccgatacttgaaatcaagtta 47422204  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 52285321 - 52285420
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    |||||||||||||||||| |||||||||||| | |||||| ||||  |||||||  ||||||||||||||||||| |  | |||||||||||||||||||    
T  52285321 ctttaaataaagttaagggacctaaacagaccttttattacttataggaccaaattgatacttaaaatcaagttaagggaccaaaagaacatttaagcct 52285420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39277851 - 39277925
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||| ||||| |||||| ||||| |||||||||||||||| |||||||||||    
T  39277851 ctttaaataaagttaagggacctaaacggactttttattacttatgggaccaaaccgatacttgaaatcaagtta 39277925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 19920603 - 19920496
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    |||||||||||||||||| |||||||| ||  | |||||| ||||| |||||||||||||||| ||||||||||| |  |||||  || |||||||||||    
T  19920603 ctttaaataaagttaagggacctaaacggatcttttattacttatgggaccaaaccgatacttgaaatcaagttaagggatcaattgagcatttaagcct 19920504  T
Q  100 atcttttt 107  Q
    || |||||    
T  19920503 attttttt 19920496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 45823056 - 45823154
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcc 98  Q
    |||||||||||||||||| |||||||| ||||| |||||| ||||| ||||||||| ||| || ||||||||||| |  |||||  |||||||||||||    
T  45823056 ctttaaataaagttaagggacctaaacggactttttattacttatgggaccaaaccaatatttgaaatcaagttaagggatcaattgaacatttaagcc 45823154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 16959107 - 16959204
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagc 97  Q
    |||||||||||||||||| ||||||||| | || |||||| ||||| |||||||||||||||| ||||||||| |    ||||||||| |||||||||    
T  16959107 ctttaaataaagttaagggacctaaacataatttttattacttatgggaccaaaccgatacttgaaatcaagtcaaaggatcaaaagagcatttaagc 16959204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 47421988 - 47421915
Alignment:
Q  2 tttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    ||||||||||||||||| |||||||||||| | |||||| ||||| ||||||||||||| || |||||||||||    
T  47421988 tttaaataaagttaagggacctaaacagacattttattacttatgggaccaaaccgatatttgaaatcaagtta 47421915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27334443 - 27334369
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||| ||  | |||||| ||||||||||||| |||||||| |||||||||||    
T  27334443 ctttaaataaagttaagggacctaaacggatcttttattacttatgagaccaaatcgatacttgaaatcaagtta 27334369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28990397 - 28990323
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||| | ||| | |||||| ||||| |||||||||||||||| |||||||||||    
T  28990397 ctttaaataaagttaagggacctaagcggaccttttattacttatgggaccaaaccgatacttgaaatcaagtta 28990323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36077123 - 36077197
Alignment:
Q  1 ctttaaataaagttaagga-cctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||| || ||||||||||| | |||||| ||||| || ||||||||||||| |||||||||||    
T  36077123 ctttaaataaagttaatgaacctaaacagaccttttattacttatgggagcaaaccgatacttgaaatcaagtta 36077197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39277680 - 39277606
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||| |||||||||| ||||| |||||| ||||| |||||||| ||||||| |||| ||||||    
T  39277680 ctttaaataaagttaagggacctaaacggactttttattacttatgggaccaaactgatacttgaaattaagtta 39277606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 16958939 - 16958866
Alignment:
Q  2 tttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    ||||||||||||||||| |||||||  ||| | |||||||||||| ||||||||||| |||| |||||||||||    
T  16958939 tttaaataaagttaagggacctaaatggaccttttattatttatgggaccaaaccgacacttgaaatcaagtta 16958866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30050184 - 30050281
Alignment:
Q  1 ctttaaataaagttaag-gacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagc 97  Q
    ||||||||||||||||| ||| ||| | ||||| |||||| || || |||||||||||||||| |||||||||||    | |||||||||||||||||    
T  30050184 ctttaaataaagttaagagacataatcggactttttattacttgtgcgaccaaaccgatacttgaaatcaagttaatggaccaaaagaacatttaagc 30050281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 30050013 - 30049918
Alignment:
Q  1 ctttaaataaagttaaggacct-aaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaa 95  Q
    ||||||||||||||||||  || |||| ||||| ||||||  ||||||||||||||||||||| |||| |||||| |  | ||||||| |||||||    
T  30050013 ctttaaataaagttaagggactcaaacggactttttattacatatgagaccaaaccgatacttgaaataaagttaagggaccaaaagagcatttaa 30049918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10394228 - 10394154
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| | ||||||  || | |||||| ||||| |||||||||||||||| |||||||||||    
T  10394228 ctttaaataaagttaagggatctaaacgaaccttttattacttatgggaccaaaccgatacttgaaatcaagtta 10394154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10394399 - 10394473
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||| ||| | ||| |||||||| ||||||| | |||||| |||||||||||    
T  10394399 ctttaaataaagttaagggacctaaacggaccttttaatatttatgggaccaaaacaatacttgaaatcaagtta 10394473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28990567 - 28990641
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||| ||||||||| |||||||| ||| | |||||| ||||| ||||||||| |||||| |||||||||||    
T  28990567 ctttaaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccaatacttgaaatcaagtta 28990641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 45822885 - 45822811
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||| ||||| |||||| ||||| |||||||  ||||||| |||| ||||||    
T  45822885 ctttaaataaagttaaggaacctaaacggactttttattacttatgggaccaaattgatacttgaaattaagtta 45822811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 49186098 - 49186024
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||| |||| ||||| ||| | |||||| |||| ||||||||| ||||||| |||||||||||    
T  49186098 ctttaaataaagttaaaggacgtaaacggaccttttattacttataagaccaaactgatacttgaaatcaagtta 49186024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 36076983 - 36076909
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| ||||||||  || | |||||| ||||| || ||| ||||||||| |||||||||||    
T  36076983 ctttaaataaagttaagggacctaaacgaaccttttattacttatgggatcaagccgatacttgaaatcaagtta 36076909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 15158417 - 15158349
Alignment:
Q  5 aaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagt 72  Q
    ||||||| |||||| ||||||||  || | |||||| ||||| |||||||||||||||| |||||||||    
T  15158417 aaataaatttaagggacctaaacgaaccttttattacttatgggaccaaaccgatacttgaaatcaagt 15158349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 49220351 - 49220425
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||| ||||||    
T  49220351 ctttaaataaagttaagggacctaaacagactttttattatttatgggaccaaaccgatacttgaaattaagtta 49220425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 49220211 - 49220138
Alignment:
Q  2 tttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  49220211 tttaaataaagttaaaggacctaaacggactttttattatttatgggactaaaccgatacttaaaatcaagtta 49220138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 31071183 - 31071283
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    |||||||||||||||||| |||||||||||| | |||||||||||| || ||||||||||||| ||||||||||| |  |  |||||| |||||||||||    
T  31071183 ctttaaataaagttaagggacctaaacagaccttttattatttatgggatcaaaccgatacttgaaatcaagttaagggaagaaaagagcatttaagcct 31071282  T
Q  100 a 100  Q
    |    
T  31071283 a 31071283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 11047247 - 11047347
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    |||||||||||||||||| |||||||| ||| | |||||| ||||| |||||||||||||||| ||||||||||| |  | |||  ||||||||||||||    
T  11047247 ctttaaataaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaattgaacatttaagcct 11047346  T
Q  100 a 100  Q
    |    
T  11047347 a 11047347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 31071045 - 31070947
Alignment:
Q  3 ttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagccta 100  Q
    |||||||||||||||| || ||||| ||  | |||||| ||||| |||||||| ||||||||||||||||||| |  | ||||||||||||||||||||    
T  31071045 ttaaataaagttaagggacttaaacggatcttttattacttatgggaccaaactgatacttaaaatcaagttaagggaccaaaagaacatttaagccta 31070947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28253709 - 28253783
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| || ||| ||||| | |||||||||||| |||||| ||||||||| |||||||||||    
T  28253709 ctttaaataaagttaagggacttaatcagaccttttattatttatgggaccaatccgatacttgaaatcaagtta 28253783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 18734154 - 18734238
Alignment:
Q  17 ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcctat 101  Q
    |||||||||||||||| |||||| ||| | |||||| |||||||||||||| ||||||    ||||||||| |||||||| ||||    
T  18734154 ggacctaaacagactttttattacttaagggaccaagccgatacttaaaataaagttaatggatcaaaagagcatttaagtctat 18734238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 18734039 - 18733945
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaa 95  Q
    |||||||||||||||||| || ||||||||||| ||| |||| ||| |||||||| ||||||| ||||||||||| |  | ||||||||| |||||    
T  18734039 ctttaaataaagttaagggacttaaacagactttttactatt-atgggaccaaactgatacttgaaatcaagttaagagaccaaaagaacgtttaa 18733945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 52857074 - 52857000
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| | |||||| ||| | |||||| ||||| |||||||||||||||| |||| ||||||    
T  52857074 ctttaaataaagttaaggtatctaaacggaccttttattacttatgggaccaaaccgatacttgaaattaagtta 52857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 46453143 - 46453196
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaa 53  Q
    |||||||||||||||||| |||||||| ||||| |||||| |||||||||||||    
T  46453143 ctttaaataaagttaagggacctaaacggactttttattacttatgagaccaaa 46453196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4953393 - 4953453
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    |||||||||||||||||| || ||||||||||| |||||| ||||| ||||||| ||||||    
T  4953393 ctttaaataaagttaagggacttaaacagactttttattacttatgggaccaaaacgatac 4953453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 11047061 - 11046992
Alignment:
Q  5 aaataaagttaaggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||| ||||||||  ||| | |||||  ||||| |||||||||||||| | |||||||||||    
T  11047061 aaataaagttaaagacctaaagggaccttttatttcttatgggaccaaaccgatacatgaaatcaagtta 11046992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 36194896 - 36194996
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    |||||||||||||||| |||||||||| || || | |||||||||| |||||||||||||||||||||||||||| |  |  |||||| |||||||||||    
T  36194896 ctttaaataaagttaaaggacctaaacggatttttgattatttatgggaccaaaccgatacttaaaatcaagttaagggactaaaagagcatttaagcct 36194995  T
Q  100 a 100  Q
    |    
T  36194996 a 36194996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 36194725 - 36194624
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    |||||||||||||||||| | |||||||||||| |||||| ||||| ||||||| |||||||| ||||||||||| |  |  |||||| |||||||||||    
T  36194725 ctttaaataaagttaagggatctaaacagactttttattacttatgggaccaaaacgatacttgaaatcaagttaagggactaaaagagcatttaagcct 36194626  T
Q  100 at 101  Q
    ||    
T  36194625 at 36194624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 31933371 - 31933272
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    |||||||||||||||||| | ||||| |||| | |||||| ||||| ||||||||| |||||||||||||| ||| |  | |||||||||||||||||||    
T  31933371 ctttaaataaagttaagggatctaaatagaccttttattacttatgggaccaaaccaatacttaaaatcaaattaagggaccaaaagaacatttaagcct 31933272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 12654970 - 12655064
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacattta 94  Q
    |||||||||||||||||| |||||||| ||  | |||||| ||||| |||||||||||||||| ||||||||||| |  ||||||||| ||||||    
T  12654970 ctttaaataaagttaagggacctaaacggaacttttattacttatgggaccaaaccgatacttgaaatcaagttaagggatcaaaagagcattta 12655064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31933540 - 31933641
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    |||||||||||||||  ||| |||||  ||||| |||||| ||||| |||||||||||||||| ||||||||||| |  | ||||||| |||||||||||    
T  31933540 ctttaaataaagttagcggatctaaatggactttttattacttatgggaccaaaccgatacttgaaatcaagttaagggaccaaaagagcatttaagcct 31933639  T
Q  100 at 101  Q
    ||    
T  31933640 at 31933641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13557408 - 13557482
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||| ||||||||| |||||||| ||| | |||||| ||||| |||||||||||||||| |||||||||||    
T  13557408 ctttaaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgaaatcaagtta 13557482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 12654799 - 12654703
Alignment:
Q  1 ctttaaataaagttaaggac-ctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 96  Q
    |||||||||||||||||||  |||||  ||| | |||||||||||| ||||||||||| |||| |||| |||||| |  | ||||||| ||||||||    
T  12654799 ctttaaataaagttaaggaaactaaatggaccttttattatttatgggaccaaaccgacacttgaaataaagttaagggaccaaaagagcatttaag 12654703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21015201 - 21015261
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    |||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||| ||||||    
T  21015201 ctttaaataaagttaagggacccaaacagactttttattacttatgggaccaaagcgatac 21015261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 18847464 - 18847391
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||| |||| |||||| || | |||||| |||||||||| || |||||||| |||||||||||    
T  18847464 ctttaaataaagttaagggacataaacaaaccttttattacttatgagacc-aatcgatacttgaaatcaagtta 18847391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 13557221 - 13557164
Alignment:
Q  17 ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    ||||||||||  || | |||||| ||||| |||||||||||||||| |||||||||||    
T  13557221 ggacctaaacgaaccttttattacttatgggaccaaaccgatacttgaaatcaagtta 13557164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10134706 - 10134646
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    |||||||||||||||| |||||||||| ||| | |||||| ||||| ||||||| ||||||    
T  10134706 ctttaaataaagttaagggacctaaacggaccttttattacttatgggaccaaagcgatac 10134646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 18847605 - 18847677
Alignment:
Q  3 ttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    ||||| |||||||||| || |||| |||||| |||||| ||||| ||| |||| ||||||| |||||||||||    
T  18847605 ttaaacaaagttaagggacttaaatagactttttattacttatgggacaaaactgatacttgaaatcaagtta 18847677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32871708 - 32871633
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttctt-attatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| ||||||||||| || || |||||||||| ||||||||| ||||||||||||||||||    
T  32871708 ctttaaataaagttaagggacctaaacagatttttttattatttatgggaccaaaccaatacttaaaatcaagtta 32871633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6000577 - 6000503
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||  ||||| |||||| ||||| |||||||||||||||| |||||||||||    
T  6000577 ctttaaataaagttaagggacctaaatggactttttattacttatgggaccaaaccgatacttgaaatcaagtta 6000503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8462945 - 8462871
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||| |||||||||||||| | |||||||||||| |||||||| |||| || |||||||||||    
T  8462945 ctttaaataaagttaaaggacctaaacagacattttattatttatgggaccaaactgatatttgaaatcaagtta 8462871  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4133106 - 4133180
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||| ||| | |||||| |||||||| |||||| |||||| |||||||||||    
T  4133106 ctttaaataaagttaagggacctaaacggacattttattacttatgagatcaaaccaatacttgaaatcaagtta 4133180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 43392395 - 43392322
Alignment:
Q  2 tttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    ||||||||||||||||| |||||||| ||| | ||| |||||||| ||||||||| |||||| |||||||||||    
T  43392395 tttaaataaagttaagggacctaaacggaccttttaatatttatgggaccaaaccaatacttgaaatcaagtta 43392322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16962942 - 16962882
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    |||||||||||||||| |||||||||| ||| | |||||| ||||||||||||| ||||||    
T  16962942 ctttaaataaagttaatggacctaaacggaccttttattacttatgagaccaaagcgatac 16962882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 25732012 - 25731916
Alignment:
Q  5 aaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagccta 100  Q
    |||| ||||||||| | |||| ||||| | |||||| ||||| ||| |||||||||||| ||||||||||| |  | ||||||| ||||||||||||    
T  25732012 aaatcaagttaagggatctaagcagaccttttattacttatgggactaaaccgatacttgaaatcaagttaagggaccaaaagagcatttaagccta 25731916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6000716 - 6000783
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaat 67  Q
    |||||||||||||||| |||||||||| ||||| |||||| ||||  |||||||| ||||||| ||||    
T  6000716 ctttaaataaagttaagggacctaaacggactttttattacttataggaccaaactgatacttgaaat 6000783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18417485 - 18417559
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||  ||| | |||||||||||  || ||||||||||||| |||| ||||||    
T  18417485 ctttaaataaagttaagggacctaaatggaccttttattatttataggatcaaaccgatacttgaaataaagtta 18417559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32389711 - 32389781
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaa 70  Q
    |||||||||||||||| |||| ||||||||| | |||||| ||||  |||||||| ||||||| |||||||    
T  32389711 ctttaaataaagttaagggacttaaacagacattttattacttattggaccaaactgatacttgaaatcaa 32389781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24846342 - 24846289
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaa 53  Q
    |||||||||||||||||| |||||||| ||| | |||||| |||||||||||||    
T  24846342 ctttaaataaagttaagggacctaaacggaccttttattacttatgagaccaaa 24846289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30284185 - 30284246
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatact 61  Q
    |||| ||||||||||||| |||||||| ||| | |||||| ||||||||||||| |||||||    
T  30284185 ctttcaataaagttaagggacctaaacggacattttattacttatgagaccaaagcgatact 30284246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24485804 - 24485864
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    |||||||||||||||| |||| ||||| ||||| |||||| ||||| ||||||| ||||||    
T  24485804 ctttaaataaagttaagggacttaaacggactttttattacttatgggaccaaaacgatac 24485864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18508791 - 18508851
Alignment:
Q  1 ctttaaataaagttaagga-cctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||    
T  18508791 ctttaaataaagttaaggaacctaaacagactttttattatttatgggaccaaatcgatac 18508851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9990053 - 9989980
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| ||||||||| || | |||||| ||||| |||||||||||| |||||||||||||||    
T  9990053 ctttaaataaagttaagggacctaaacataccttttattaattatg-gaccaaaccgattcttaaaatcaagtta 9989980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 8417657 - 8417561
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaag 96  Q
    |||||||||||||||||| |||||||| ||  | |||||| || ||||| ||||||||||||| ||||||||||| |  | ||||||| ||||||||    
T  8417657 ctttaaataaagttaagggacctaaacggaacttttattacttgtgagatcaaaccgatacttgaaatcaagttaagggaccaaaagagcatttaag 8417561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9990192 - 9990262
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaa 70  Q
    |||||||||||||||||| |||||||||||  | | ||||||||||| | ||||| |||||||||||||||    
T  9990192 ctttaaataaagttaagggacctaaacagatctttcattatttatgaaatcaaactgatacttaaaatcaa 9990262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 18968771 - 18968871
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagttacgcaatcaaaagaacatttaagcct 99  Q
    ||||| |||||||||||| | | ||||| || | |||||||||||| || ||||||||||||| ||||||||||| | ||||||  || ||||||| |||    
T  18968771 ctttatataaagttaagggatccaaacataccttttattatttatgggatcaaaccgatacttgaaatcaagttaaggaatcaattgagcatttaaacct 18968870  T
Q  100 a 100  Q
    |    
T  18968871 a 18968871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35463832 - 35463892
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    |||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||| ||||||    
T  35463832 ctttaaataaagttaagggaccgaaacagactttttattacttatgggaccaaagcgatac 35463892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 18968607 - 18968533
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| |||||||| ||  | |||||  |||||| |||||||| |||||| |||||||||||    
T  18968607 ctttaaataaagttaagggacctaaacggatcttttattgattatgaaaccaaaccaatacttgaaatcaagtta 18968533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1211664 - 1211738
Alignment:
Q  1 ctttaaataaagttaagg-acctaaacagacttcttattatttatgagaccaaaccgatacttaaaatcaagtta 74  Q
    |||||||||||||||||| | |||||||||  | |||||| |||||||||||||| ||||||| |||||||||||    
T  1211664 ctttaaataaagttaagggatctaaacagatcttttattacttatgagaccaaacagatacttgaaatcaagtta 1211738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26061 - 26001
Alignment:
Q  1 ctttaaataaagttaa-ggacctaaacagacttcttattatttatgagaccaaaccgatac 60  Q
    |||||||||||||||| |||| |||||| |||| |||||| ||||| ||||||| ||||||    
T  26061 ctttaaataaagttaagggacttaaacaaactttttattacttatgggaccaaagcgatac 26001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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