View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21587_high_19 (Length: 215)
Name: NF21587_high_19
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21587_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 5509430 - 5509254
Alignment:
| Q |
15 |
tgaataaagagaaatagaactttggtagtgtggaacaatggaacacaacaagagtaaactgtatatttaccagtctcctctaactagttacatttcctaa |
114 |
Q |
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| T |
5509430 |
tgaataaagagaaatggaactttggtagggtggaacaatggaacacaacaagagtaaactgtatgtttactagtctcctctaactagttacatttcctaa |
5509331 |
T |
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| Q |
115 |
tgacacctctaattattctaacatattcttttttgattttgatattgaataattaggtttcctattactaacagataacattatact |
201 |
Q |
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| T |
5509330 |
tgacacctcta---attctaaca-------ttttgattttgatattgaataattaggttttctatcactaacagataacattatact |
5509254 |
T |
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