View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21587_high_3 (Length: 447)
Name: NF21587_high_3
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21587_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 54323365 - 54322919
Alignment:
| Q |
1 |
atctcaccagatagataattgtttgacaaataaattctctctagcctattaatcttgcataggctgtgaggtattgttccgtttagtcgattactagaca |
100 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
54323365 |
atctcaccagatagataattctttgacaaatacattctctctagcctattaatcttgcataggctgtgaggtattgttccgtttattcggttactagaca |
54323266 |
T |
|
| Q |
101 |
actttaagaaagttaagttggcaaggttggcaatgtgaggtggaatagagccatgtatgagattttcttcaaggtgaaggtgttgcaagcttgaaggaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54323265 |
actttaagaaagttaagttggcaaggttggcaatgtgaggtggaatagagccatgtatgagattttcttcaaggtgaaggtgttgcaagcttgaaggaag |
54323166 |
T |
|
| Q |
201 |
attaccaataatatgaggcagcctcccaccgagactgtttccggccaattcaagttcttgaaagtgtgatgaattcttaaaagaagcaaagaaaggttcg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| |
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| T |
54323165 |
attaccaataatatgaggcagcctcccaccgagactgtttccggccaattcaagttcttgaaagtttgatgaattcatcaaagaagcaaagaaaggttcg |
54323066 |
T |
|
| Q |
301 |
aggttagtgttaccatcatggctaacaaaattgttatacgataagtaaaggaattgtaattgtggaaaattacatataatcttagatggaagttttccac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54323065 |
aggttagtgttaccatcatggctaacaaaattgttatacgataagtaaaggaattgtaattgtggaaaattacatataatcttagatggaagttctccac |
54322966 |
T |
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| Q |
401 |
tcaacatatttgactccaaatcaagccatttaagcttagtagaattt |
447 |
Q |
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| T |
54322965 |
tcaacatatttgactccaaatcaagccatttaagcttagtagaattt |
54322919 |
T |
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