View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21587_high_6 (Length: 401)
Name: NF21587_high_6
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21587_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Original strand, 46061791 - 46062170
Alignment:
| Q |
15 |
caattacatgcatcgccatactcgttatcattacatataatctttaatgtaagtttaggaataattatcattaatgaattaccttccgaagcattccctc |
114 |
Q |
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| T |
46061791 |
caattacatgcatcgccatactcgttatcataacatataatctttaatgtaagtttaggaataattatcattaatgaattaccttccgaagcattccctc |
46061890 |
T |
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| Q |
115 |
aagacgttgaatctcgttcttcgcataatctgcaccttttaccatactgctcttagcaagttttaagtagaggttgccatatctgaaataccacaaaaac |
214 |
Q |
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| T |
46061891 |
aagacgttgaatctcgttcttcgcataatctgcaccttttaccatactgctcttagcaagttttaagtagaggttgccatatctgaaataccacaaaaac |
46061990 |
T |
|
| Q |
215 |
caacatcagataattaatatcaaacaacttaactagggcctcacnnnnnnnccaattcaaattataaaactcaagcaaaccagaacaaatcaagaaatgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46061991 |
caacatcagataattaatatcaaacaacttaactagggcctcacaaaaaaaccaattcaaattataaaactcaagcaaaccagaacaaatcaagaaatgt |
46062090 |
T |
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| Q |
315 |
gatatcattcaaaccttgcagtagaacccttaagcgtattaactttctctacaagtctggaaaagacaatcttcttctca |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46062091 |
gatatcattcaaaccttgcagtagaacccttaagcgtattaactttctctacaagtctggaaaagacaatcttcttctca |
46062170 |
T |
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