View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21587_low_1 (Length: 603)
Name: NF21587_low_1
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21587_low_1 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 20 - 591
Target Start/End: Original strand, 14695955 - 14696525
Alignment:
| Q |
20 |
aaatagatgagaaattagggaagaaagtgaaaccttgnnnnnnnnnnnnnnnggaaggaagaaagtgaaaacttgttattattcgacatatcagaattgg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14695955 |
aaatagatgagaaattagggaagaaagtgaaaccttgttttttttttttttttgaaggaagaaagtgaaaacttgttattattcgacatatcagaattgg |
14696054 |
T |
|
| Q |
120 |
ttccccttacaacatatatcattactattggcacaacaacttgcattaatctaaggaaaagaaaataacggaatcttaaatttaagaaaggaaataaacc |
219 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
14696055 |
ttccccttacatcatatatcattactcttggcacaacaacttgcat-aatctaaagaaaagaaaataacagaatcttaaatttaggaaagaaaataaacc |
14696153 |
T |
|
| Q |
220 |
aaactataaaattaggaaagggaattaactaaacgtaaacaagtgtaactcttctttctcacaaaatctctcgtctaactaggtgtatcatccaacatgt |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14696154 |
aaactataaaattaggaaagggaattaactaaatgtaatcaagtgtaactcttctttctcaaaaaatctctcgtctaactaggtgtatcatccaacatgt |
14696253 |
T |
|
| Q |
320 |
cgtaacaaatcaccctcaccatgtcattgcttgaaattgaagtaatgtatgactctataaacttcatgacacctaagtgtctcctaatttgagatggaat |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14696254 |
ggtaacaaatcaccctcaccatgtcattgcttgaaattgaagtaatgtatgactctataaacttcatgacacctaagtgtctcctaatttgagatggaat |
14696353 |
T |
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| Q |
420 |
ttgttcttgaccgagcagtagattaaggctcatttacataggcccaaaccaaaacaaggccaattccgcatttcgttcaattactcctaacacatctctc |
519 |
Q |
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| T |
14696354 |
ttgttctggaccgagcagtagattaaggctcatttacataggcccaaaccaaaacaaggccaattccgcatttcgttcaattactcctaacacatctctc |
14696453 |
T |
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| Q |
520 |
cccataggagggtgttcatagcacttcgggacccattcaaaccgaatggagaacgtctcccaaatatgccta |
591 |
Q |
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| T |
14696454 |
cccgcaggagggtgttaatagcacttcgggccccattcaaatcgaatggagaacgtctcccaaacatgccta |
14696525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 74 - 263
Target Start/End: Original strand, 27758224 - 27758413
Alignment:
| Q |
74 |
aaggaagaaagtgaaaacttgttattattcgacatatcagaattggttcccc-ttacaacatatatcattactattggcacaacaacttgcattaatcta |
172 |
Q |
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|||||||||||||||| ||| ||||||||| ||||||| |||||||||| | ||||| ||||||| | | | || ||| |||||||||||| |||||| |
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| T |
27758224 |
aaggaagaaagtgaaaccttattattattcaacatatctgaattggttcactattacatcatatatagtcaatcttagcataacaacttgcat-aatcta |
27758322 |
T |
|
| Q |
173 |
aggaaaagaaaataacggaatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaactaaacgtaaacaagt |
263 |
Q |
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|| ||| | ||||||| |||| |||||||| ||||||||||||| |||| |||||||||| ||| |||| ||||| || |||| ||||| |
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| T |
27758323 |
agaaaagggaaataacataatcataaatttagaaaaggaaataaactaaaccataaaattagaaaaaggaaataacttaatgtaatcaagt |
27758413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 27758207 - 27758243
Alignment:
| Q |
19 |
aaaatagatgagaaattagggaagaaagtgaaacctt |
55 |
Q |
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| T |
27758207 |
aaaatagatgacaaattaaggaagaaagtgaaacctt |
27758243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 35401072 - 35401035
Alignment:
| Q |
19 |
aaaatagatgagaaattagggaagaaagtgaaaccttg |
56 |
Q |
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| T |
35401072 |
aaaatagatgagaaattatggaagaaagtgaaaccttg |
35401035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 28983194 - 28983228
Alignment:
| Q |
18 |
aaaaatagatgagaaattagggaagaaagtgaaac |
52 |
Q |
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| T |
28983194 |
aaaaatagatgagaaattaggggagaaagtgaaac |
28983228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 28984025 - 28984103
Alignment:
| Q |
170 |
ctaaggaaaagaaaataacggaatcttaaatttaagaaaggaaataaaccaaactataaaattaggaaagggaattaac |
248 |
Q |
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| T |
28984025 |
ctaaggaaaggaaaataacataatcataaatctaggaaaggaaataaactgaaccgtaaaattagtaaagggaaataac |
28984103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 10593 - 10561
Alignment:
| Q |
19 |
aaaatagatgagaaattagggaagaaagtgaaa |
51 |
Q |
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| T |
10593 |
aaaatagatgagaaattaggggagaaagtgaaa |
10561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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