View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21587_low_14 (Length: 240)
Name: NF21587_low_14
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21587_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 32745461 - 32745323
Alignment:
| Q |
1 |
aaacttaaattatttaaaagtgnnnnnnnatcttatttaaatatgttcagcttttatctcaaaaacaaaacacgtttaaccttaatcttaagctaaaaaa |
100 |
Q |
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| T |
32745461 |
aaacttaaattatttaaaagtgtttttttatcttatttaaatatgctcagcttttatctcaaaaacaaaatacgtttaaccttaatcttaagctaaaaaa |
32745362 |
T |
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| Q |
101 |
caaaatcttactgttcatgatcttcatcaatcttgttca |
139 |
Q |
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| T |
32745361 |
caaaatcttactgttcatgatcttcatcaatcttgttca |
32745323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 32745298 - 32745193
Alignment:
| Q |
120 |
atcttcatcaatcttgttcattttcatcttcatattcaacctaaacaacacaagtcaaaattgatactcgaaaaatctagaatccaaaaaattcacacgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32745298 |
atcttcatcaatcttgttcattttcatcttcatattcaacctaaacaacacaagtcaaaattgatactcgaaaaatctagaatccaaaaaattcacacac |
32745199 |
T |
|
| Q |
220 |
tgaatt |
225 |
Q |
| |
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|||||| |
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| T |
32745198 |
tgaatt |
32745193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 35 - 181
Target Start/End: Complemental strand, 31094141 - 31093992
Alignment:
| Q |
35 |
atttaaatatgttcagcttttatctcaaaaacaaaacacgtttaaccttaatc---ttaagctaaaaaacaaaatcttactgttcatgatcttcatcaat |
131 |
Q |
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| T |
31094141 |
atttaaatatgctcagcttttatctcaaaaacaaaacatgtttaaccttaatcaaattaagttcaaaaacaaaatcttaatgttcatcatctttatcaat |
31094042 |
T |
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| Q |
132 |
cttgttcattttcatcttcatattcaacctaaacaacacaagtcaaaatt |
181 |
Q |
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| T |
31094041 |
cttgttcattttcatcttcatattcaacttaaacaacacaagtcaaaatt |
31093992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 31142586 - 31142786
Alignment:
| Q |
30 |
atcttatttaaatatgttcagcttttatctcaaaaacaaaacacgtttaaccttaatc---ttaagctaaaaaacaaaatcttactgttcatgatcttca |
126 |
Q |
| |
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|||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||| || || | ||||||||||||||| |||||| ||||| | |
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| T |
31142586 |
atctgatttaaatatgctcagcttttatct-aaaaacaaaacatttttaaccttaatcaaatttagttcaaaaacaaaatcttaacgttcatcatcttta |
31142684 |
T |
|
| Q |
127 |
tcaatcttgttcattttcatcttcatattcaacctaaacaacacaagtcaaaattgatac--tcgaaaaatctagaatccaaaaaattcacacgctgaat |
224 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| | || || |||||| | |||||||||||||||||| ||||| |
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| T |
31142685 |
tcaatcttgttcattttcatctttatattcaacctaaacaccacaagttaaaattaaaacattcagaaaatccataatccaaaaaattcacactgtgaat |
31142784 |
T |
|
| Q |
225 |
tt |
226 |
Q |
| |
|
|| |
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|
| T |
31142785 |
tt |
31142786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 22711999 - 22712115
Alignment:
| Q |
30 |
atcttatttaaatatgttcagcttttatctcaaaaacaaaacacgtttaaccttaatc---ttaagctaaaaaacaaaatcttactgttcatgatcttca |
126 |
Q |
| |
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||||||||||||| || ||| ||||||||||||||||||||||| |||||| | |||| |||| | ||||| |||||||| ||||||| |||||| |
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| T |
22711999 |
atcttatttaaatttgctcatcttttatctcaaaaacaaaacacctttaacttaaatctatttaaattcaaaaataaaatcttgatgttcatcttcttca |
22712098 |
T |
|
| Q |
127 |
tcaatcttgttcatttt |
143 |
Q |
| |
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||||||||||||||||| |
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| T |
22712099 |
tcaatcttgttcatttt |
22712115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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