View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21587_low_2 (Length: 453)
Name: NF21587_low_2
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21587_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 40567329 - 40566995
Alignment:
| Q |
19 |
tttttaatctgaaggatattgtgcaggtattgtttttaaataattttatcattaaaactcaattaaacgnnnnnnnngttttgtt-gtgttaatcgtctg |
117 |
Q |
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| T |
40567329 |
tttttaatctgaaggatattgtgcaggtattgtttttaaataattttatcattaaaactcaattaaatttttttttttttttttttgtgttaatcgtctg |
40567230 |
T |
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| Q |
118 |
attat--gaggaaagagattctgaaaattatttaactaaatcaaagaacatgttctctttatcatatttagaaagaacaatgttccttttcttatc-ttt |
214 |
Q |
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| T |
40567229 |
attatacgaggaaagagattctgaaaattatttaactaaatcaaagaacatgttctctttatcatatttagaaagaacaatgttccttttctcatctttt |
40567130 |
T |
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| Q |
215 |
tctacaagctaagtgaaccctatttatnnnnnnntacaacgatatgtgtcaataatatgatccaatgatatggccccattcaaggttcatagcatataat |
314 |
Q |
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| T |
40567129 |
tctacaagctaagtgaacccta------aagaaatacaacgatatgtgtcaataatatgatccaatgatatggccccattcaaggttcatagcatagaat |
40567036 |
T |
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| Q |
315 |
tttttctcatgggagacaattagagatgagaatcatacctt |
355 |
Q |
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| T |
40567035 |
tttttctcatgggagacaattagagatgagaatcatacctt |
40566995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 40567001 - 40566950
Alignment:
| Q |
393 |
atacctttgatgatcatttactcctttagttgattagcttagtataatttac |
444 |
Q |
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| T |
40567001 |
atacctttgatgatcatttactcctttagttgattagcttagtataatttac |
40566950 |
T |
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