View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21587_low_20 (Length: 213)

Name: NF21587_low_20
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21587_low_20
NF21587_low_20
[»] chr7 (5 HSPs)
chr7 (20-157)||(3704126-3704264)
chr7 (20-157)||(3696591-3696729)
chr7 (157-199)||(32706547-32706589)
chr7 (158-197)||(9595340-9595379)
chr7 (158-197)||(9646303-9646342)
[»] chr3 (2 HSPs)
chr3 (158-199)||(5553679-5553720)
chr3 (161-199)||(23433224-23433262)
[»] scaffold0146 (3 HSPs)
scaffold0146 (158-195)||(6826-6863)
scaffold0146 (160-199)||(9717-9756)
scaffold0146 (160-199)||(17384-17423)
[»] chr8 (1 HSPs)
chr8 (158-199)||(20731081-20731122)
[»] chr4 (7 HSPs)
chr4 (158-199)||(20264941-20264982)
chr4 (157-199)||(9167392-9167434)
chr4 (158-199)||(17266600-17266641)
chr4 (158-199)||(34098926-34098967)
chr4 (158-197)||(15017546-15017585)
chr4 (158-197)||(39488053-39488092)
chr4 (93-152)||(41021770-41021830)
[»] scaffold0585 (1 HSPs)
scaffold0585 (158-199)||(776-817)
[»] scaffold0096 (1 HSPs)
scaffold0096 (158-199)||(22519-22560)
[»] scaffold0076 (1 HSPs)
scaffold0076 (158-199)||(54978-55019)
[»] scaffold0017 (1 HSPs)
scaffold0017 (158-199)||(4497-4538)
[»] chr6 (3 HSPs)
chr6 (158-199)||(18553545-18553586)
chr6 (158-199)||(20417455-20417496)
chr6 (98-158)||(34940912-34940973)
[»] chr1 (4 HSPs)
chr1 (158-199)||(20190330-20190371)
chr1 (158-199)||(22062047-22062088)
chr1 (158-197)||(20127279-20127318)
chr1 (158-191)||(6473989-6474022)
[»] chr5 (1 HSPs)
chr5 (158-197)||(244345-244384)
[»] chr2 (2 HSPs)
chr2 (162-197)||(23732354-23732389)
chr2 (161-199)||(15410005-15410043)
[»] scaffold0083 (1 HSPs)
scaffold0083 (158-196)||(33427-33465)
[»] scaffold0010 (1 HSPs)
scaffold0010 (158-199)||(136963-137004)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 3704126 - 3704264
Alignment:
Q  20 aagtacttaacaaacaccaaagctttagaaacttaatagccaaatcataaccataaatatgctaatgaatgtagtcaaaatcgaaatattgcatcagatc 119  Q
    ||||| || ||||||||| |||||| |||||| ||||||  ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||     
T  3704126 aagtaattcacaaacaccgaagcttgagaaacataatagttaaatcataaccataaatatgctaatcaaggtagtcaaaatcgaaatattgcatcagatt 3704225  T
Q  120 gaaaga-tatagcaaaattgtaaaacataagatcacaac 157  Q
    ||||||  ||||||| |||||||||||||||||||||||    
T  3704226 gaaagaggatagcaagattgtaaaacataagatcacaac 3704264  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 3696591 - 3696729
Alignment:
Q  20 aagtacttaacaaacaccaaagctttagaaacttaatagccaaatcataaccataaatatgctaatgaatgtagtcaaaatcgaaatattgcatcagatc 119  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || ||||||| ||| || |||||| || |||||    
T  3696591 aagtaattcacaaacaccaaagctttagaaacttaatagccaaatcataactataaataggctaatcaaggtagtcagaatagagatattgaattagatc 3696690  T
Q  120 gaaaga-tatagcaaaattgtaaaacataagatcacaac 157  Q
    ||||||  ||||||| || ||||||||||||||||||||    
T  3696691 gaaagaggatagcaagatcgtaaaacataagatcacaac 3696729  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 32706589 - 32706547
Alignment:
Q  157 ctgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  32706589 ctgatgagtgccacggagccgtcggaagcaaattaagaataat 32706547  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 9595340 - 9595379
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaata 197  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  9595340 tgatgagtgccacggagccgtcggaagcaaattatgaata 9595379  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 9646303 - 9646342
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaata 197  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  9646303 tgatgagtgccacggagccgtcggaagcaaattatgaata 9646342  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 5553720 - 5553679
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5553720 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 5553679  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 23433262 - 23433224
Alignment:
Q  161 tgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  23433262 tgagtgtcacggagccgtcggaagcaaattctgaataat 23433224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 6863 - 6826
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaa 195  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6863 tgatgagtgtcacggagccgtcggaagcaaattaagaa 6826  T

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Target: scaffold0146; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 9756 - 9717
Alignment:
Q  160 atgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  9756 atgagtgtcacggagtcgtcggaagcaaattaagaataat 9717  T

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Target: scaffold0146; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 17423 - 17384
Alignment:
Q  160 atgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  17423 atgagtgtcacggagtcgtcggaagcaaattaagaataat 17384  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 20731122 - 20731081
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  20731122 tgatgagtgccacggagccgtcggaagcaaattaagaataat 20731081  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 20264941 - 20264982
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  20264941 tgatgagtgtcacggagccgtcggaagcaaattatgaataat 20264982  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 9167434 - 9167392
Alignment:
Q  157 ctgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||||||||| |||||||||||| ||||||||||||||    
T  9167434 ctgatgagtgtcacgaagccgtcggaagtaaattaagaataat 9167392  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 17266600 - 17266641
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  17266600 tgatgagtgccacggagccgtcggaagcaaattatgaataat 17266641  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 34098967 - 34098926
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  34098967 tgatgagtgtcactgagccgtcggaagcaaattatgaataat 34098926  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 15017546 - 15017585
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaata 197  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  15017546 tgatgagtgccacggagccgtcggaagcaaattatgaata 15017585  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 39488053 - 39488092
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaata 197  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  39488053 tgatgagtgccacggagccgtcggaagcaaattatgaata 39488092  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 41021770 - 41021830
Alignment:
Q  93 gtcaaaatcgaaatattgcatcagatcgaaa-gatatagcaaaattgtaaaacataagatc 152  Q
    ||||||||||| |||||||||| |||||||| |  ||||||||||  ||||||||||||||    
T  41021770 gtcaaaatcgagatattgcatcggatcgaaaggggatagcaaaatcataaaacataagatc 41021830  T

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Target: scaffold0585 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 776 - 817
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||| ||||||||||||||||| ||||||||||||||    
T  776 tgatgagtgccacggagccgtcggaagaaaattaagaataat 817  T

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Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 22519 - 22560
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  22519 tgatgagtgccacgaagccgtcggaagcaaattaagaataat 22560  T

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Target: scaffold0076 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 55019 - 54978
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  55019 tgatgaatgccacggagccgtcggaagcaaattaagaataat 54978  T

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Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 4497 - 4538
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  4497 tgatgagtatcacggagccgtcggaagcaaattatgaataat 4538  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 18553586 - 18553545
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  18553586 tgatgagtgtcatggagccgtcggaagcaaattatgaataat 18553545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 20417455 - 20417496
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  20417455 tgatgagtgccacggagccgtcggaagcaaattatgaataat 20417496  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 34940912 - 34940973
Alignment:
Q  98 aatcgaaatattgcatcagatcgaaa-gatatagcaaaattgtaaaacataagatcacaact 158  Q
    ||||||||| |||||||||||||||| |  || |||| |||||||||||||||||| |||||    
T  34940912 aatcgaaatcttgcatcagatcgaaaggggatggcaagattgtaaaacataagatcgcaact 34940973  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 20190330 - 20190371
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    |||||||||||||||||||||||||||||| ||| |||||||    
T  20190330 tgatgagtgtcacggagccgtcggaagcaacttatgaataat 20190371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 22062047 - 22062088
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  22062047 tgatgagtgtcactgagccgtcggaagcaaattatgaataat 22062088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 20127318 - 20127279
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaata 197  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  20127318 tgatgagtgccacggagccgtcggaagcaaattatgaata 20127279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 6474022 - 6473989
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaatta 191  Q
    ||||||||| ||||||||||||||||||||||||    
T  6474022 tgatgagtgccacggagccgtcggaagcaaatta 6473989  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 244345 - 244384
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaata 197  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  244345 tgatgagtgccacggagccgtcggaagcaaattatgaata 244384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 23732354 - 23732389
Alignment:
Q  162 gagtgtcacggagccgtcggaagcaaattaagaata 197  Q
    |||||||||||||||||||||||||||||| |||||    
T  23732354 gagtgtcacggagccgtcggaagcaaattatgaata 23732389  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 15410043 - 15410005
Alignment:
Q  161 tgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  15410043 tgagtgccacgaagccgtcggaagcaaattaagaataat 15410005  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 33465 - 33427
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaat 196  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  33465 tgatgagtgtcacggagccgtcggaaacaaattatgaat 33427  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 137004 - 136963
Alignment:
Q  158 tgatgagtgtcacggagccgtcggaagcaaattaagaataat 199  Q
    ||||||||| |||| |||||||||||| ||||||||||||||    
T  137004 tgatgagtgccacgaagccgtcggaaggaaattaagaataat 136963  T

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