View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21587_low_4 (Length: 424)
Name: NF21587_low_4
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21587_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 3126117 - 3126497
Alignment:
| Q |
19 |
tctactacttctctttcattttactagacaggaacatactacatgaagtagaagtatgagaaactaagaaagaggagctgaacattagttgtatgattca |
118 |
Q |
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| T |
3126117 |
tctactacttctctttcattttact-gataggaacatactacatgaaggagaagtatgagaaactaagaaagaggagctgaacattagttgtatgattca |
3126215 |
T |
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| Q |
119 |
tggtatgatcggtttcatggtctctcctaattctcttccttctatgccctttgttgttgttatttatagccacaaattaggtttaagatcattgagctac |
218 |
Q |
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| T |
3126216 |
tggtgtgatcgatttcatggtctctcctaattctcttccttctatgccctttgttgttgttatttatagccaaaaattaggtttaagatcattgagctac |
3126315 |
T |
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| Q |
219 |
agaggcatgcatgtgacaagggttgagtttgcagaaaacgcaaaggcgtgcgcctgtagtataatatgtttggaccacaaaaaccgnnnnnnnnnnnnat |
318 |
Q |
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| T |
3126316 |
agaggcatgcatgtgacaagggttgagtttgcagaaaatgcaaaggcgtgcgcctatagtataatatgtttggaccacaaaaaccgtttttgttttttac |
3126415 |
T |
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| Q |
319 |
ttggcaattttgtaaaattggtgaaagaatgtagtttctttatacacaattagtttagtgctagtaaacacaattatattag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3126416 |
ttggcaattttgtaaaattggtgaaagaatgtagtttctttatacacaattagtttagtgctagtaaacacaattatattag |
3126497 |
T |
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