View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21587_low_5 (Length: 414)
Name: NF21587_low_5
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21587_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 54322456 - 54322852
Alignment:
| Q |
18 |
caggtgttaaatgcaacaatgaaagtaataataagaggatcatagagcttgatcttagtggaaaatcactaggaggaactatttcccctgctcttgctaa |
117 |
Q |
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| T |
54322456 |
caggtgttaaatgcaacaatgaaagtaataataagaggatcatagagcttgatcttagtggaaaatcactaggaggaactatttcccctgctcttgctaa |
54322555 |
T |
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| Q |
118 |
cctctctttgttgcaaattcttgacctttctgggaatcttttggtgggtcacattccaagagaattaggctatttagttcaccttgaacaacttagttta |
217 |
Q |
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| T |
54322556 |
cctctctttgttgcaaattcttgacctttctgggaatcttttggtgggtcacattccaagagaattaggctatttagttcaccttgaacaacttagttta |
54322655 |
T |
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| Q |
218 |
tcttggaatttacttcaaggagacattcctttagaattttgttcacttcacaacttgtactaccttgacttgggaggcaatcaacttgagggagagattc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
54322656 |
tcttggaatttacttcaaggagacattcctttagaatttggttcacttcacaacttgtactaccttgacttgggaagcaatcaacttgagggagagattc |
54322755 |
T |
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| Q |
318 |
ctccaccccttttatgcaatgttacttcattgagttatatagacctttctaataattcattaggtggaaaaatcccattaaacaataagtgtatcat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54322756 |
ctccaccccttttatgcaatgttacttcattgagttatatagacctctctaataattcattaggtggaaaaatcccattaaacaataagtgtatcat |
54322852 |
T |
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