View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21587_low_7 (Length: 391)
Name: NF21587_low_7
Description: NF21587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21587_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 5233084 - 5233445
Alignment:
| Q |
17 |
cacagaaatggtaagatttcatataacgtggtactttacaataatgatgtaagtaatcgaagattatgagagtaannnnnnnnnnnnnn---aatctttg |
113 |
Q |
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| T |
5233084 |
cacagaaatggtaagatttcatataacgtggtactttacaataatgatgtaagtaatcgaagattatgagagtaattttttttttttttttaaatctttg |
5233183 |
T |
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| Q |
114 |
gataggtatcatattcctcggtcatggttgagttcgagtgggaacgtcttggttgttctagaagaatggggaggtgaccctactggaatttcattggtga |
213 |
Q |
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| T |
5233184 |
gataggtatcatattcctcggtcatggttgagttcgagtgggaacgtcttggttgttctagaagaatggggaggtgaccctactggaatttcattggtga |
5233283 |
T |
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| Q |
214 |
aaagaacataaagtttgattatttgattctaccaaattaccaaattaatatggtttaaattttatcattatattcacgtgtgtaaagtgtttcatattta |
313 |
Q |
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| T |
5233284 |
aaagaacataaagtttgattatttgattctaccaaattaccaaattaatatggtttaaattttattattatattcacgtgtgtaaaatgtttcatattta |
5233383 |
T |
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| Q |
314 |
acatcgatgctccatctttttctggtagttcaagtttacaccaaaagattggatgcagagat |
375 |
Q |
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| T |
5233384 |
acattgatgctccatctttttctggtagttcaagtttacaccaaaagattggatgcagagat |
5233445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 17129075 - 17129208
Alignment:
| Q |
108 |
tctttggataggtatcatattcctcggtcatggttgagttcgagtgggaacgtcttggttgttctagaagaatggggaggtgaccctactggaatttcat |
207 |
Q |
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| T |
17129075 |
tctttcgacaggtatcatattcctcgatcatggctgaacccaagcgggaacgtcttggttgtgttggaagaatggggaggcgaccctaccggaatttcac |
17129174 |
T |
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| Q |
208 |
tggtgaaaagaacataaagtttgattatttgatt |
241 |
Q |
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| T |
17129175 |
tggtgaaaagaacatgaagtgtgctcatttgatt |
17129208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 52546585 - 52546538
Alignment:
| Q |
174 |
gaagaatggggaggtgaccctactggaatttcattggtgaaaagaaca |
221 |
Q |
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| T |
52546585 |
gaagaatggggaggtgaccctaatggaatatctttggtgaaaagaaca |
52546538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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