View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21588_high_2 (Length: 426)
Name: NF21588_high_2
Description: NF21588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21588_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 154 - 409
Target Start/End: Original strand, 2240469 - 2240724
Alignment:
| Q |
154 |
cgataaggaaggaattgatcaatcccacttgaattaagtagtactacgatatggaattatggggcagtagttattaaagctatactcaaagttgcaagaa |
253 |
Q |
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| T |
2240469 |
cgataaggaaggaattgatcaatcccacttgaattaagtagtactacgatatggaattatggggcagtagttattaaacctatactcaaagttgcaagaa |
2240568 |
T |
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| Q |
254 |
acaaacaagaaagaagaagaatatatatatctttgcacgcaaaaaatattagaaatcttttagtcataagtagttatgattgcttatnnnnnnngttatg |
353 |
Q |
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| T |
2240569 |
acaaacaagaaagaagaagaatatatatatctttgcacgcaaaaaatattataaatcttttagtcataagtagttatgattgcttataaaaaaagttatg |
2240668 |
T |
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| Q |
354 |
attaatttgctaaaattcaaagagatcaacatagaaggagaagacatgtaactaag |
409 |
Q |
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| T |
2240669 |
attaatttgctaaaattcaaagagatcaacatagaaggagaagacatgtaactaag |
2240724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2240348 - 2240474
Alignment:
| Q |
1 |
ttgataaaagtatacatcaaatatgaacgacatttggggctagaaaacacgatcaaatatatgagatctagagtttaaactctagtttctaca-taac-- |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2240348 |
ttgataaaagtatacatcaaatatgaacgacatttggggctagaaaacacgatcaaatatatgagatctagagtttaaactctagtttctacagtaacat |
2240447 |
T |
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| Q |
98 |
--attcttttataaaagaataccataa |
122 |
Q |
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|||||||||||||||||||| |||| |
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| T |
2240448 |
taattcttttataaaagaatacgataa |
2240474 |
T |
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