View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21588_low_4 (Length: 353)
Name: NF21588_low_4
Description: NF21588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21588_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 32244029 - 32243698
Alignment:
| Q |
18 |
agcttttagggagaaaacttgcatatgttcaaacataaagtctccaagtatatcagggttttgatcaaacaaatatatacgagtgatacttaattctata |
117 |
Q |
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| T |
32244029 |
agcttttagggagaaaacttgcatatgttcaaacataaagtctccaagtatatcagagttttgatcaaacaaatat----gagtgatacttaattctata |
32243934 |
T |
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| Q |
118 |
cctcctatnnnnnnnngttgtaaagagtagtaactaatcatgtttctcagtcttcgcgatggtacaaccactcttggactcaggcttcttccttgcatgt |
217 |
Q |
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| T |
32243933 |
cctcctataaaaaaagttagtaaagagtagtaactaatcatgtttctcagtcttcgcgatagtacaaccactcttggactcaggcttcttccttgcatgt |
32243834 |
T |
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| Q |
218 |
ataacccaacagagaatgtaacccataaaggccccaagcaccagtacacttcctccttggacataccgagataatgtagcttcttcaatcaaacctttag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32243833 |
ataacccaacagagaatgtaacccataaaggccccaagcaccagtacacttcctccttggacataccgggataatgtagcttcttcaatcaaacctttag |
32243734 |
T |
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| Q |
318 |
gtttatcactaccaatatcgacattaatattaccat |
353 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
32243733 |
gtttagcactaccaatatcgacattaatattaccat |
32243698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 349
Target Start/End: Complemental strand, 32249003 - 32248798
Alignment:
| Q |
148 |
taactaatcatgtttc-tcagtcttcgcgatggtacaaccactcttggactcaggct---tcttccttgcatgtataacccaacagagaatgtaacccat |
243 |
Q |
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|||||||||||||||| ||||||||| || | || |||||||| ||||||| |||| ||||||| |||||| ||| ||| |||||||| ||||| |
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| T |
32249003 |
taactaatcatgtttcctcagtcttcacggggctaaaaccactcctggactcgggctgcttcttcctagcatgtgaaacgaaaccaagaatgtagcccat |
32248904 |
T |
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| Q |
244 |
aaaggccccaagcaccagtacacttcctccttggacataccgagataatgtagcttcttcaatcaaacctttaggtttatcactaccaatatcgacatta |
343 |
Q |
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||||||||||||||| |||||||||||||| |||||||||| || || || | ||||| |||| ||||| ||||||| ||||||||||| || ||||| |
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| T |
32248903 |
aaaggccccaagcactagtacacttcctccctggacataccacgacaacgtggattctttaatctgaccttcaggtttagcactaccaataccgccatta |
32248804 |
T |
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| Q |
344 |
atatta |
349 |
Q |
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| |||| |
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| T |
32248803 |
acatta |
32248798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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