View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21588_low_5 (Length: 331)
Name: NF21588_low_5
Description: NF21588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21588_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 2240014 - 2240321
Alignment:
| Q |
11 |
cacagaaaaagtttgaattataagtagcnnnnnnnnntgattgtttattatggatgagtgcattttttagaaaaataaatccattctattggtctttgag |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2240014 |
cacagaaaaagtttgaattataagtagcaaaaaaaa-tgattgtttattatggatgagtgcattttttagaaaaataaatcccttctattggtctttgag |
2240112 |
T |
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| Q |
111 |
atctaactcaaagaacaaaactgaacttgttaagctaaatannnnnnngataagctatctatatacataaataaaataaaaaatccattccatcaagatg |
210 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2240113 |
atctaactcaaa-------actgaacttgttaagctaaatatttttgtgataagctatctatatacataaataaaataaaaaatccattccatcaagatg |
2240205 |
T |
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| Q |
211 |
acttgtgtctatctactctctgagtatggacgtagatcatttacnnnnnnnnnnttcaaattgtttcttatttattttatatataataaacttgtttact |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2240206 |
acttgtgtctatctactctctgagtatggacgtagatcatttac-aaaaaaaaattcaaattgtttcttatttattttatatataataaacttgtttact |
2240304 |
T |
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| Q |
311 |
ttgcatctgtgtaggtc |
327 |
Q |
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||||||||||||||||| |
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| T |
2240305 |
ttgcatctgtgtaggtc |
2240321 |
T |
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