View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21589_high_12 (Length: 261)
Name: NF21589_high_12
Description: NF21589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21589_high_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 33 - 261
Target Start/End: Original strand, 26732900 - 26733128
Alignment:
| Q |
33 |
atgaatgctctagctataatccattgtcacaaagttgatttacatctaatcactctagtataatccaaaaagattatttatatttaaacttgaaaatgtt |
132 |
Q |
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| T |
26732900 |
atgaatgctctagctataatccattgtcacaaagttgatttacatctaatcactctagtataagccaaaaagattatttatatttaaacttgaaaatgtt |
26732999 |
T |
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| Q |
133 |
tgggacagaaccatatacgcataaaaacaattaaaaatttaactaatgcataatacactttaaccaaacatagaatacgattctgcaatatctagtggat |
232 |
Q |
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| T |
26733000 |
tgggacagaaccatatacgcataaaaacaattaaaaatttaactaatgcataatacactttaaccaaacatagaatacgattctgcaatatctagtggat |
26733099 |
T |
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| Q |
233 |
gatggtggaaataacttgaaacatagaat |
261 |
Q |
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| T |
26733100 |
gatggtggaaataacttgaaacatagaat |
26733128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 72 - 261
Target Start/End: Original strand, 26724460 - 26724648
Alignment:
| Q |
72 |
ttacatctaatcactctagtataatccaaaaagattatttatatttaaacttgaaaatgtttgggacagaaccatatacgcataaaaacaattaaaaatt |
171 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26724460 |
ttacatctaatcactctagtataagccaaaaagattatttatatt-aaacttggaaatgttagggacagaaccatatacgcataaaaacaattaaaaatt |
26724558 |
T |
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| Q |
172 |
taactaatgcataatacactttaaccaaacatagaatacgattctgcaatatctagtggatgatggtggaaataacttgaaacatagaat |
261 |
Q |
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| T |
26724559 |
taactaatgcataatacactttaaccaaacatagaatacgattctgcaatatctagtggatgatggtggaaataacttgaaacatagaat |
26724648 |
T |
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