View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21589_high_6 (Length: 323)
Name: NF21589_high_6
Description: NF21589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21589_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 278
Target Start/End: Complemental strand, 37595959 - 37595671
Alignment:
| Q |
6 |
agagagaagaatcaaagttatcaagctattgaaccaagggaacttcagaaaacatctacacataatgtttttcaggtttgttaaattcacattttctact |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595959 |
agagagaagaatcaaagttatcaagctattgaaccaagggaacttcagaaaacatctacacataatgtttttcaggtttgttaaattcacattttctact |
37595860 |
T |
|
| Q |
106 |
acactaggtcaaatatagagcaaatttcannnnnnncatctacattatatatgtagcatggctttaaattgtggttcaatttcgctccaaaccttttgat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595859 |
acactaggtcaaatatagagcaaatttcatttttttcatctacattatatatgtagcatggctttaaattgtggttcaatttcgctccaaaccttttgat |
37595760 |
T |
|
| Q |
206 |
gttgtagagacttcaaaaccttttaggt----------------aaaccatgatataatatatgtaggttgaattagtgtcttctctta |
278 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595759 |
gttgtagagacttcaaaaccttttaggttgtcgaccacaatttaaaaccatgatataatatatgtaggttgaattagtgtcttctctta |
37595671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University