View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21589_high_7 (Length: 302)
Name: NF21589_high_7
Description: NF21589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21589_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 15007638 - 15007803
Alignment:
| Q |
15 |
agatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataattgtcttttagttatgcctcataattca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15007638 |
agatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataattgtcttttagttaggcctcataattca |
15007737 |
T |
|
| Q |
115 |
aatcatgtga---agttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttc |
177 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| | ||||||| |
|
|
| T |
15007738 |
aatcatgtgaattagttcaaataaattttcgcatgaacttaaggtaatattgattcacattacttc |
15007803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 40787243 - 40787412
Alignment:
| Q |
1 |
gctggtattataacaga---tattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataattgtcttttag |
97 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
40787243 |
gctggtattataacagaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattt----------tcatttag |
40787332 |
T |
|
| Q |
98 |
ttatgcctcataattcaaatcatgtgaagttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttc |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
40787333 |
ttatgcctcataattcaaatcatgtgaagtttaaataaattttcgcatgatcttgaggtaatattgattctcattacttc |
40787412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 52311151 - 52311122
Alignment:
| Q |
148 |
acttgaggtaatattgattctcgttacttc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
52311151 |
acttgaggtaatattgattctcgttacttc |
52311122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University