View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21589_low_1 (Length: 513)
Name: NF21589_low_1
Description: NF21589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21589_low_1 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 513
Target Start/End: Complemental strand, 26733603 - 26733105
Alignment:
| Q |
20 |
taaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctcagttttgtacctatgaattggtttgcaatgtttgcattg |
119 |
Q |
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| T |
26733603 |
taaataacatgcacaatagtagcaaataacatgtgatgtttttcatctttctcttttgctcagttttgtacctatgaattggtttgcaatgtttgcattg |
26733504 |
T |
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| Q |
120 |
ggtgtatttaatttctctttttggtaccacac-----tcacactacatgcagtgattgcattctgtatttataataagtacaattatagttaatttaatt |
214 |
Q |
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| T |
26733503 |
ggtgtatttaatttctctttttggtaccacaccactctcacactacatgcagtgattgcattctgtatttataataagtacaattatagttaatttaatt |
26733404 |
T |
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| Q |
215 |
gatgttatcttattggttaacatatggtagagtggagtataatctttgtgtaatatcctatttcccactagttaagtccacgagtagacttaatttactt |
314 |
Q |
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| T |
26733403 |
gatgttatcttattggttaacatatggtagagtggagtataatctttgtgtaatatcctatttcccactagttaagtccacgagtagacttaatttactt |
26733304 |
T |
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| Q |
315 |
ttgtaacaaagatgcaattctttgtaaaagacacactttagaatgaaaccaaagttgatttatgtatttttccaaattnnnnnnngaaactggagagaag |
414 |
Q |
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| T |
26733303 |
ttgtaacaaagatgcaattctttgtaaaagacacactttggaatgaaaccaaagttgatttatgtatttttccaaattaaaaaaagaaactggagagaag |
26733204 |
T |
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| Q |
415 |
aaaaggtgttttacgtggaagaattggaactttgtatttgagaaagttgttgctcgtgaaaaggtgaaggcattgattctatgtttcaagttatttcca |
513 |
Q |
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| T |
26733203 |
aaaaggtgttttacgtggaagaattggaactttgtatttgagaaagttgttgctcgtgaaaaggtgaaggcattgattctatgtttcaagttatttcca |
26733105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 26725289 - 26725058
Alignment:
| Q |
20 |
taaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctcagttttgtacctatgaattggtttgcaatgtttgcattg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26725289 |
taaataacatgcacaatagtagcaaataacatgtgatgcttttcatctttctcttttgctaagttttgtacctatgaattggtttgcaatgtttgcattg |
26725190 |
T |
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| Q |
120 |
ggtgtatttaatttctctttttggtaccacactcacactacatgcagtgattgcattctgtatttataataagtacaattatagttaatttaattgatgt |
219 |
Q |
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| T |
26725189 |
ggtgtatttaatttctctttttggtaccacactcacactacatgcagtgattgcattctatatttataataagtacaattatagttaatttaattgatat |
26725090 |
T |
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| Q |
220 |
tatcttattggttaacatatggtagagtggag |
251 |
Q |
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| T |
26725089 |
tatcttatttgttcacatatggtggagtggag |
26725058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 310 - 513
Target Start/End: Complemental strand, 26724814 - 26724625
Alignment:
| Q |
310 |
tacttttgtaacaaagatgcaattctttgtaaaagacacactttagaatgaaaccaaagttgatttatgtatttttccaaattnnnnnnngaaactggag |
409 |
Q |
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| T |
26724814 |
tacttttgtgacaaagatgcaattctttgttaaagacgcactttggaatgaaaccaaagttgatttatgtagtttgccaaattaaaaaa-gaaaatgggg |
26724716 |
T |
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| Q |
410 |
agaagaaaaggtgttttacgtggaagaattggaactttgtatttgagaaagttgttgctcgtgaaaaggtgaaggcattgattctatgtttcaagttatt |
509 |
Q |
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| T |
26724715 |
agaagaaaaggtgttt------gagaaattggaa-------tttgagaaagttgttgctcgtgaaaaggtgaaggcattgattctatgtttcaagttatt |
26724629 |
T |
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