View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21589_low_2 (Length: 490)
Name: NF21589_low_2
Description: NF21589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21589_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 34019217 - 34019675
Alignment:
| Q |
18 |
gttaccatcacttggaccatctttcgtaggatcccacttaaagaggtacttattttcatttttgtgatt--taa-tttgtacannnnnnn-agttccata |
113 |
Q |
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| T |
34019217 |
gttaccatcacatggaccatctttcgtaggacctcacttaaagaggtacttatttacatttttgtgattaataactttataaaaaaaatttagtttcata |
34019316 |
T |
|
| Q |
114 |
agtgactaatgctt-aatgtatatttcattcatttgtgttcttcatgaatcactctcactaccatatgttt-cttgtacatgtaggctccactatacatt |
211 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||| |||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
34019317 |
agtgactaatgctttaatgaatatttcattcatttgtgttctatatgaatcattctaactaccatatgttttcttgtgcatgtaggctccactatacatt |
34019416 |
T |
|
| Q |
212 |
tttgctcagttggtaggatcaacgcttgcaagtggaacattatcactgatgttcgatgtcacgtccaaaacttattttggaaccgtaccagttggatcaa |
311 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34019417 |
tttgctcagttggtaggatcaacgcttgcgagtggaacattatcactaatgttcgatgtcacgtccaaaacttattttggaaccgtaccagttggatcaa |
34019516 |
T |
|
| Q |
312 |
atggccagtctttagttgtagaaattatcatcagttttctcttaatgtttgtcatttcagcggtttcaaccgatgaaagagcggtatgcactcgtaaata |
411 |
Q |
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| T |
34019517 |
atggccagtctttagttgtagaaatcatcatcagttttctcttaatgtttgtcatttcagcggtttcaaccgacgaaagagcggtatgcactcgtaaata |
34019616 |
T |
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| Q |
412 |
tctacacattaagggatatacgcttgtcggtgcaaaacaattttatactaacatccaat |
470 |
Q |
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| T |
34019617 |
tctacacattaagggatatacgcttgtcggtgcaaaacaattttatactaacatccaat |
34019675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 1703936 - 1703824
Alignment:
| Q |
284 |
tattttggaaccgtaccagttggatcaaatggccagtctttagttgtagaaattatcatcagttttctcttaatgtttgtcatttcagcggtttcaaccg |
383 |
Q |
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||||| ||||| ||||| || |||||||| | || |||||||| ||||||| || |||||||||||||||||||||||||||||||| ||| | || | |
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| T |
1703936 |
tatttcggaactgtaccggtcggatcaaactgtcaatctttagtgttagaaatcattatcagttttctcttaatgtttgtcatttcagctgttactacag |
1703837 |
T |
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| Q |
384 |
atgaaagagcggt |
396 |
Q |
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|||| |||||||| |
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| T |
1703836 |
atgatagagcggt |
1703824 |
T |
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