View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21589_low_3 (Length: 440)

Name: NF21589_low_3
Description: NF21589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21589_low_3
NF21589_low_3
[»] chr3 (8 HSPs)
chr3 (13-418)||(5333427-5333832)
chr3 (13-418)||(29518235-29518644)
chr3 (207-417)||(12835935-12836156)
chr3 (13-176)||(12836149-12836310)
chr3 (199-312)||(45335045-45335158)
chr3 (247-340)||(38274365-38274462)
chr3 (13-88)||(20176322-20176397)
chr3 (279-317)||(45335161-45335199)
[»] chr8 (6 HSPs)
chr8 (13-176)||(21116756-21116917)
chr8 (210-417)||(10626087-10626305)
chr8 (207-417)||(21116910-21117131)
chr8 (13-176)||(10625930-10626091)
chr8 (321-401)||(19512069-19512153)
chr8 (321-399)||(35339057-35339139)
[»] chr4 (4 HSPs)
chr4 (209-417)||(1239992-1240211)
chr4 (13-176)||(1239836-1239997)
chr4 (321-401)||(18368486-18368570)
chr4 (321-401)||(36594353-36594437)
[»] chr7 (1 HSPs)
chr7 (326-410)||(45805179-45805267)
[»] chr1 (1 HSPs)
chr1 (321-403)||(42599855-42599941)


Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 5333832 - 5333427
Alignment:
Q  13 atcatcacttttttcaatatcggttctagttataacctatcatacaaaataacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggtt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5333832 atcatcacttttttcaatatcggttctagttataacctatcatacaaaataacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggct 5333733  T
Q  113 ttatcaatatcaattcttcagcaatatcatgtaaataaacatacaagcaattgttcaacaaatagagagaagtaaacaatcataagggaacctaaacaaa 212  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5333732 ttatcaatatcaattcttcagcaacatcatgtaaataaacatataagcaattgttcagcaaatagagagaagtaaacaatcataagggaacctaaacaaa 5333633  T
Q  213 tactacgataagtatgtctaatcactaacgataagtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcctaagtacccatccac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5333632 tactacgataagtatgtctaatcactaacgataagtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcctaagtacccatccac 5333533  T
Q  313 gcttcctctagacatggcgataaacattcccctccaagatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttctagttcatcga 412  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5333532 gcttcctctagacatggcgataaacatttccctccaagatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttctagttcatcga 5333433  T
Q  413 gagcat 418  Q
    ||||||    
T  5333432 gagcat 5333427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 29518235 - 29518644
Alignment:
Q  13 atcatcacttttttcaatatcggttctagttataacctatcatacaaaataacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggtt 112  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29518235 atcatcacttttttcaatattggttctagttataacctatcatacaaagtaacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggct 29518334  T
Q  113 ttatcaatatcaattcttcagcaatatcatgtaaataaacatacaagcaattgttcaacaaatagagagaagtaaacaatcataagggaacctaaacaaa 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29518335 ttatcaatatcaattcttcagcaacatcatgtaaataaacatacaagcaattgttcagcaaatagagagaagtaaacaatcataagggaacctaaacaaa 29518434  T
Q  213 tactacgataagtatgtctaatcactaacgataagtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcctaagtacccatccac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29518435 tactacgataagtatgtctaatcactaacgataagtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcctaagtacccatccac 29518534  T
Q  313 gcttcctc----tagacatggcgataaacattcccctccaagatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttctagttca 408  Q
    ||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29518535 gcttcctctcattagacatggcgataaacatttccctccaagatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttctagttca 29518634  T
Q  409 tcgagagcat 418  Q
    ||||||||||    
T  29518635 tcgagagcat 29518644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 207 - 417
Target Start/End: Complemental strand, 12836156 - 12835935
Alignment:
Q  207 aacaaatactacgataagtatgtctaatcactaacgat---aagtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcctaagta 303  Q
    ||||||||||| ||||||||||| | |||||||| |||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12836156 aacaaatactaagataagtatgtttgatcactaaagatgataagtatgtctcatcactagaacctaaacaaatacatgttatatccttagagcctaagta 12836057  T
Q  304 cccatccacgcttcctc----tagacatggcgataaacattcccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaat 395  Q
    |||||||||||||||||    ||| |||||||||||||||| ||||||||     |||||||||||||||||| ||||||||||| | ||||||||||||    
T  12836056 cccatccacgcttcctctcattaggcatggcgataaacatttccctccaatcagaatccttaaacttttccaaagcttttccataggtatcatctgaaat 12835957  T
Q  396 gtcttctagttcatcgagagca 417  Q
    |||||||||| |||||||||||    
T  12835956 gtcttctagtccatcgagagca 12835935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 12836310 - 12836149
Alignment:
Q  13 atcatcacttttttcaatatcggttctagttataacctatcatacaaaataacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggtt 112  Q
    ||||||||||||||||||||| ||| |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12836310 atcatcacttttttcaatatcagttatagttataacttgtcatacaaagtaacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggtt 12836211  T
Q  113 ttatcaatatcaattcttcagcaatatcatgtaaataaacatacaagcaattgttcaacaaata 176  Q
    ||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  12836210 tta-caatatcaattc-tcagcaacatcatgtaaataaacacacaagcaattgttcaacaaata 12836149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 45335045 - 45335158
Alignment:
Q  199 ggaacctaaacaaatactacgataagtatgtctaatcactaacgataagtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcct 298  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45335045 ggaacctaaacaaatactaagataagtatgtctgatcactaaagataagtatgtctcatcactagaacctaaacaaattcaagttatatccttagagcct 45335144  T
Q  299 aagtacccatccac 312  Q
    ||||||||||||||    
T  45335145 aagtacccatccac 45335158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 247 - 340
Target Start/End: Original strand, 38274365 - 38274462
Alignment:
Q  247 gtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcctaagtacccatccacgcttcctc----tagacatggcgataaacatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  38274365 gtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcctaagtacccatccacgcttcctctcattagacatggcgataaacatt 38274462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 20176322 - 20176397
Alignment:
Q  13 atcatcacttttttcaatatcggttctagttataacctatcatacaaaataacaataaaacttaaaaacacgatac 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20176322 atcatcacttttttcaatatcggttctagttataacctatcatacaaaataacaataaaacttaaaaacacgatac 20176397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 45335161 - 45335199
Alignment:
Q  279 aagttatatccttagagcctaagtacccatccacgcttc 317  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  45335161 aagttatatccttaaagcctaagtacccatccacgcttc 45335199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 21116756 - 21116917
Alignment:
Q  13 atcatcacttttttcaatatcggttctagttataacctatcatacaaaataacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggtt 112  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21116756 atcatcacttttttcaatatcagttatagttataacctgtcatacaaagtaacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggtt 21116855  T
Q  113 ttatcaatatcaattcttcagcaatatcatgtaaataaacatacaagcaattgttcaacaaata 176  Q
    ||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  21116856 tta-caatatcaattc-tcagcaacatcatgtaaataaacacacaagcaattgttcaacaaata 21116917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 210 - 417
Target Start/End: Original strand, 10626087 - 10626305
Alignment:
Q  210 aaatactacgataagtatgtctaatcactaacgat---aagtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcctaagtaccc 306  Q
    |||||||| |||||||||||| ||||||||| |||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  10626087 aaatactaagataagtatgtcaaatcactaaagatgataagtatgtctcatcactagaacctaaacaaatacaggttatatccttagagcctaagtatcc 10626186  T
Q  307 atccacgcttcctc----tagacatggcgataaacattcccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaatgtc 398  Q
    ||||||||||||||    ||| ||||||||||||||||  |||||||     |||||||||||||||||| ||||||||||| | |||||||||||||||    
T  10626187 atccacgcttcctctcattaggcatggcgataaacatttacctccaatcagaatccttaaacttttccaaagcttttccataggtatcatctgaaatgtc 10626286  T
Q  399 ttctagttcatcgagagca 417  Q
    ||||||| |||||||||||    
T  10626287 ttctagtccatcgagagca 10626305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 207 - 417
Target Start/End: Original strand, 21116910 - 21117131
Alignment:
Q  207 aacaaatactacgataagtatgtctaatcactaacgat---aagtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcctaagta 303  Q
    ||||||||||| ||||||||||||| |||||||| |||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  21116910 aacaaatactaagataagtatgtctgatcactaaagatgataagtatgtctcatcactagaacctaaacaaatacaggttatatccttagagcctaagca 21117009  T
Q  304 cccatccacgcttcctc----tagacatggcgataaacattcccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaat 395  Q
     ||||||||||||||||    ||| |||||||||||||||| ||||||||     |||||||||||||||||| |||||| |||| | ||||||||||||    
T  21117010 tccatccacgcttcctctcattaggcatggcgataaacatttccctccaatcagaatccttaaacttttccaaagctttttcataggtatcatctgaaat 21117109  T
Q  396 gtcttctagttcatcgagagca 417  Q
    |||||||||| |||||||||||    
T  21117110 gtcttctagtccatcgagagca 21117131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 10625930 - 10626091
Alignment:
Q  13 atcatcacttttttcaatatcggttctagttataacctatcatacaaaataacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggtt 112  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10625930 atcatcacttttttcaatatcagttatagttataacctgtcatacaaagtaacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggtt 10626029  T
Q  113 ttatcaatatcaattcttcagcaatatcatgtaaataaacatacaagcaattgttcaacaaata 176  Q
    ||| |||||||||||| |||| || |||||||||||||||| |||||||||||||||| |||||    
T  10626030 tta-caatatcaattc-tcagaaacatcatgtaaataaacacacaagcaattgttcaaaaaata 10626091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 19512069 - 19512153
Alignment:
Q  321 tagacatggcgataaacattcccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttc 401  Q
    ||||||| |||||||||||| ||||||||    |||||||||| |||||||||||||| |||||    |||||||||||||||||    
T  19512069 tagacatagcgataaacatttccctccaatcaggatccttaaatttttccaaggctttcccatagatgtcatctgaaatgtcttc 19512153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 35339139 - 35339057
Alignment:
Q  321 tagacatggcgataaacattcccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaatgtct 399  Q
    |||||||||||| ||||||| ||||||||    ||||||||||||| ||||||||||| || ||    |||||||||||||||    
T  35339139 tagacatggcgacaaacatttccctccaatctggatccttaaacttctccaaggctttcccgtagatgtcatctgaaatgtct 35339057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 209 - 417
Target Start/End: Original strand, 1239992 - 1240211
Alignment:
Q  209 caaatactacgataagtatgtctaatcactaacgat---aagtatgtctcatcactagaacctaaacaaatacaagttatatccttagagcctaagtacc 305  Q
    ||||||||| ||||||||||||  |||||||| |||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  1239992 caaatactaagataagtatgtccgatcactaaagatgataagtatgtctcatcactagaacctaaacaaatacaggttatatccttagagcctaagtatc 1240091  T
Q  306 catccacgcttcctc----tagacatggcgataaacattcccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaatgt 397  Q
    |||||||||||||||    ||| |||||||||||||||| ||||||||     |||||||||||||||||| ||||||||||| | ||||||||||||||    
T  1240092 catccacgcttcctctcattaggcatggcgataaacatttccctccaatcagaatccttaaacttttccaaagcttttccataggtatcatctgaaatgt 1240191  T
Q  398 cttctagttcatcgagagca 417  Q
    |||||||| |||||||||||    
T  1240192 cttctagtccatcgagagca 1240211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 1239836 - 1239997
Alignment:
Q  13 atcatcacttttttcaatatcggttctagttataacctatcatacaaaataacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggtt 112  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1239836 atcatcacttttttcaatatcagttatagttataacctgtcatacaaagtaacaataaaacttaaaaacacgatactcgataagaggaaaataaaaggtt 1239935  T
Q  113 ttatcaatatcaattcttcagcaatatcatgtaaataaacatacaagcaattgttcaacaaata 176  Q
    ||| |||||||||||| |||| || |||||||||||||||| ||||||||||||||| ||||||    
T  1239936 tta-caatatcaattc-tcagaaacatcatgtaaataaacacacaagcaattgttcagcaaata 1239997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 401
Target Start/End: Complemental strand, 18368570 - 18368486
Alignment:
Q  321 tagacatggcgataaacattcccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttc 401  Q
    ||||||| |||||||||||| ||||||||    |||||||||| |||||||||||||| |||||    |||||||||||||||||    
T  18368570 tagacatagcgataaacatttccctccaatcaggatccttaaatttttccaaggctttcccatagatgtcatctgaaatgtcttc 18368486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 36594353 - 36594437
Alignment:
Q  321 tagacatggcgataaacattcccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttc 401  Q
    ||||||| |||||||||||| ||||||||    |||||||||| |||||||||||||| |||||    |||||||||||||||||    
T  36594353 tagacatagcgataaacatttccctccaatcaggatccttaaatttttccaaggctttcccatagatgtcatctgaaatgtcttc 36594437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 410
Target Start/End: Original strand, 45805179 - 45805267
Alignment:
Q  326 atggcgataaacattcccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttctagttcatc 410  Q
    ||||| ||||||||| ||||||||    ||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||||    
T  45805179 atggccataaacatttccctccaatcaggatccttaaacttttccaaggttttttcataggcatcatgtgaaatgtcttctagttcatc 45805267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 42599855 - 42599941
Alignment:
Q  321 tagacatggcgataaacattcccctccaa----gatccttaaacttttccaaggcttttccataagcatcatctgaaatgtcttcta 403  Q
    |||||||||| ||||||||| ||||||||    ||||||||||||||||||||||||||||  |    |||||||||||||||||||    
T  42599855 tagacatggccataaacatttccctccaatcaggatccttaaacttttccaaggcttttccgaagatgtcatctgaaatgtcttcta 42599941  T

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